View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11396_low_29 (Length: 305)

Name: NF11396_low_29
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11396_low_29
NF11396_low_29
[»] chr5 (25 HSPs)
chr5 (17-251)||(203776-204009)
chr5 (20-256)||(26540674-26540910)
chr5 (32-222)||(1280332-1280522)
chr5 (17-169)||(3055489-3055641)
chr5 (19-151)||(22541911-22542043)
chr5 (19-139)||(27168821-27168941)
chr5 (17-151)||(11852740-11852874)
chr5 (19-119)||(22712917-22713017)
chr5 (27-176)||(8785782-8785931)
chr5 (17-176)||(23244586-23244745)
chr5 (29-112)||(19518970-19519053)
chr5 (19-134)||(2228957-2229072)
chr5 (225-288)||(203708-203772)
chr5 (3-74)||(38269393-38269464)
chr5 (3-71)||(192063-192131)
chr5 (3-59)||(28801420-28801476)
chr5 (3-40)||(31680500-31680537)
chr5 (3-40)||(33430454-33430491)
chr5 (247-288)||(26540967-26541009)
chr5 (3-40)||(10034060-10034097)
chr5 (3-40)||(12278857-12278894)
chr5 (3-40)||(17332548-17332585)
chr5 (3-40)||(36291504-36291541)
chr5 (3-40)||(37254774-37254811)
chr5 (3-40)||(39657503-39657540)
[»] scaffold0019 (2 HSPs)
scaffold0019 (18-256)||(134871-135109)
scaffold0019 (247-288)||(135166-135208)
[»] chr7 (35 HSPs)
chr7 (12-249)||(26493725-26493962)
chr7 (12-256)||(27387317-27387561)
chr7 (19-256)||(19399898-19400135)
chr7 (12-256)||(38575300-38575544)
chr7 (19-196)||(45197624-45197800)
chr7 (17-168)||(9230409-9230560)
chr7 (17-176)||(23179902-23180060)
chr7 (21-176)||(8638614-8638770)
chr7 (17-109)||(14088815-14088907)
chr7 (17-109)||(14398833-14398925)
chr7 (26-151)||(18375431-18375554)
chr7 (76-169)||(43728003-43728096)
chr7 (3-63)||(10868453-10868513)
chr7 (17-109)||(25491650-25491742)
chr7 (17-103)||(25024596-25024682)
chr7 (20-80)||(9557784-9557844)
chr7 (17-63)||(26782330-26782375)
chr7 (3-40)||(7002858-7002895)
chr7 (3-40)||(7048729-7048766)
chr7 (3-40)||(26624879-26624916)
chr7 (3-40)||(36658314-36658351)
chr7 (3-40)||(37002141-37002178)
chr7 (3-40)||(40920000-40920037)
chr7 (3-40)||(43184465-43184502)
chr7 (247-288)||(19399799-19399841)
chr7 (247-288)||(26494026-26494068)
chr7 (247-288)||(27387618-27387660)
chr7 (3-40)||(3114093-3114130)
chr7 (3-40)||(5555620-5555657)
chr7 (3-40)||(8394258-8394295)
chr7 (3-40)||(35090301-35090338)
chr7 (3-40)||(36630949-36630986)
chr7 (7-40)||(38638237-38638270)
chr7 (5-41)||(33685696-33685732)
chr7 (247-282)||(38575601-38575637)
[»] chr6 (13 HSPs)
chr6 (25-256)||(24074332-24074563)
chr6 (12-169)||(11970967-11971123)
chr6 (12-176)||(12180536-12180700)
chr6 (17-137)||(3050902-3051022)
chr6 (32-176)||(25340445-25340589)
chr6 (30-122)||(30621227-30621318)
chr6 (19-151)||(25599177-25599312)
chr6 (21-129)||(1296556-1296664)
chr6 (26-151)||(32441999-32442121)
chr6 (3-40)||(18339239-18339276)
chr6 (3-40)||(28996863-28996900)
chr6 (3-40)||(13837954-13837991)
chr6 (3-40)||(34948755-34948792)
[»] chr3 (26 HSPs)
chr3 (24-256)||(31988949-31989181)
chr3 (12-256)||(53710318-53710562)
chr3 (20-256)||(24908412-24908648)
chr3 (12-256)||(37381880-37382124)
chr3 (19-256)||(43137047-43137283)
chr3 (12-176)||(51261979-51262143)
chr3 (26-169)||(3856901-3857044)
chr3 (38-176)||(15667973-15668111)
chr3 (19-105)||(24988831-24988917)
chr3 (30-112)||(22934828-22934910)
chr3 (20-151)||(43585842-43585965)
chr3 (3-51)||(5135410-5135458)
chr3 (17-59)||(51408625-51408667)
chr3 (3-71)||(38282512-38282580)
chr3 (3-40)||(33041086-33041123)
chr3 (3-40)||(45183114-45183151)
chr3 (247-288)||(24908705-24908747)
chr3 (247-288)||(31988850-31988892)
chr3 (247-288)||(53710219-53710261)
chr3 (3-40)||(6930891-6930928)
chr3 (3-40)||(11018209-11018246)
chr3 (3-40)||(22922228-22922265)
chr3 (3-40)||(27935311-27935348)
chr3 (3-40)||(34084119-34084156)
chr3 (3-40)||(35514395-35514432)
chr3 (3-39)||(40081738-40081774)
[»] chr8 (27 HSPs)
chr8 (12-256)||(30791469-30791713)
chr8 (19-256)||(21958432-21958669)
chr8 (19-249)||(16532649-16532879)
chr8 (17-151)||(9256414-9256548)
chr8 (17-151)||(13152410-13152544)
chr8 (18-151)||(14446857-14446990)
chr8 (19-175)||(27190772-27190928)
chr8 (12-176)||(24333714-24333881)
chr8 (17-137)||(10014451-10014571)
chr8 (19-112)||(32372022-32372115)
chr8 (19-107)||(40146028-40146116)
chr8 (19-112)||(32359486-32359579)
chr8 (26-112)||(32342880-32342966)
chr8 (26-112)||(32355367-32355453)
chr8 (79-151)||(10467789-10467861)
chr8 (74-176)||(28846621-28846720)
chr8 (17-110)||(34228245-34228338)
chr8 (3-59)||(40470472-40470528)
chr8 (79-151)||(42446943-42447015)
chr8 (12-60)||(3435401-3435449)
chr8 (21-105)||(2826326-2826407)
chr8 (3-40)||(16788022-16788059)
chr8 (3-40)||(29728383-29728420)
chr8 (5-40)||(3648793-3648828)
chr8 (247-288)||(21958333-21958375)
chr8 (247-288)||(30791770-30791812)
chr8 (19-51)||(24592355-24592387)
[»] chr2 (27 HSPs)
chr2 (20-256)||(22483469-22483705)
chr2 (20-256)||(34526272-34526508)
chr2 (20-256)||(22464590-22464826)
chr2 (27-256)||(33453214-33453443)
chr2 (29-256)||(35649688-35649913)
chr2 (17-176)||(12539574-12539732)
chr2 (12-187)||(19951842-19952017)
chr2 (54-147)||(13308745-13308838)
chr2 (19-176)||(34317491-34317642)
chr2 (32-112)||(18425992-18426072)
chr2 (3-71)||(45121337-45121405)
chr2 (20-112)||(26656360-26656452)
chr2 (26-91)||(31392485-31392550)
chr2 (38-137)||(34907624-34907723)
chr2 (18-103)||(7886675-7886758)
chr2 (3-40)||(12756834-12756871)
chr2 (3-40)||(31581619-31581656)
chr2 (3-40)||(44084600-44084637)
chr2 (3-40)||(45418716-45418753)
chr2 (3-63)||(4555189-4555249)
chr2 (3-53)||(7072528-7072577)
chr2 (247-288)||(22483370-22483412)
chr2 (247-288)||(34526173-34526215)
chr2 (3-40)||(16405733-16405770)
chr2 (3-36)||(26238080-26238113)
chr2 (3-40)||(32127138-32127175)
chr2 (3-40)||(35962848-35962885)
[»] scaffold0015 (2 HSPs)
scaffold0015 (19-256)||(214179-214416)
scaffold0015 (247-288)||(214473-214515)
[»] scaffold0168 (2 HSPs)
scaffold0168 (20-256)||(15734-15970)
scaffold0168 (247-288)||(15635-15677)
[»] scaffold0007 (2 HSPs)
scaffold0007 (17-256)||(259838-260077)
scaffold0007 (247-288)||(259739-259781)
[»] chr4 (30 HSPs)
chr4 (46-256)||(27364803-27365013)
chr4 (25-256)||(55464684-55464915)
chr4 (17-176)||(31944616-31944775)
chr4 (19-181)||(12211244-12211406)
chr4 (19-151)||(53693052-53693184)
chr4 (19-196)||(42843687-42843867)
chr4 (12-176)||(4325412-4325575)
chr4 (19-128)||(3074417-3074526)
chr4 (27-112)||(8897952-8898037)
chr4 (3-63)||(48130088-48130148)
chr4 (19-112)||(10632662-10632757)
chr4 (3-63)||(30110085-30110145)
chr4 (29-112)||(3240302-3240385)
chr4 (18-74)||(25182896-25182952)
chr4 (3-40)||(6235653-6235690)
chr4 (3-40)||(25930841-25930878)
chr4 (3-40)||(30216739-30216776)
chr4 (3-40)||(36382343-36382380)
chr4 (3-40)||(44156784-44156821)
chr4 (3-40)||(48989461-48989498)
chr4 (17-91)||(1147584-1147658)
chr4 (247-288)||(27364704-27364746)
chr4 (247-288)||(55464972-55465014)
chr4 (3-40)||(3292893-3292930)
chr4 (3-40)||(6690232-6690269)
chr4 (3-40)||(28877247-28877284)
chr4 (3-40)||(29319702-29319739)
chr4 (3-40)||(35546086-35546123)
chr4 (3-40)||(40529148-40529185)
chr4 (3-40)||(50205074-50205111)
[»] chr1 (23 HSPs)
chr1 (20-256)||(21973807-21974043)
chr1 (63-256)||(17127359-17127552)
chr1 (21-154)||(35948998-35949131)
chr1 (18-151)||(9637146-9637279)
chr1 (12-176)||(25017386-25017550)
chr1 (19-186)||(26272947-26273114)
chr1 (19-176)||(48606630-48606787)
chr1 (17-151)||(14498922-14499056)
chr1 (17-169)||(52753836-52753985)
chr1 (19-176)||(30559023-30559180)
chr1 (20-176)||(40864738-40864894)
chr1 (12-176)||(32379867-32380027)
chr1 (17-150)||(30054847-30054980)
chr1 (17-109)||(17874845-17874937)
chr1 (3-60)||(33489819-33489876)
chr1 (3-60)||(41972253-41972310)
chr1 (3-71)||(28463200-28463268)
chr1 (19-67)||(11843917-11843965)
chr1 (3-40)||(3829116-3829153)
chr1 (3-40)||(42310938-42310975)
chr1 (247-288)||(17127260-17127302)
chr1 (247-288)||(21974100-21974142)
chr1 (3-40)||(7433578-7433615)
[»] scaffold0012 (2 HSPs)
scaffold0012 (20-256)||(197025-197261)
scaffold0012 (247-288)||(196926-196968)
[»] scaffold0178 (1 HSPs)
scaffold0178 (17-176)||(17740-17899)
[»] scaffold0198 (1 HSPs)
scaffold0198 (27-142)||(1430-1545)
[»] scaffold0002 (1 HSPs)
scaffold0002 (19-142)||(435366-435491)
[»] scaffold0726 (1 HSPs)
scaffold0726 (19-105)||(954-1040)
[»] scaffold0170 (1 HSPs)
scaffold0170 (29-91)||(9161-9223)
[»] scaffold0502 (1 HSPs)
scaffold0502 (3-40)||(5363-5400)
[»] scaffold0041 (1 HSPs)
scaffold0041 (3-40)||(53058-53095)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 204009 - 203776
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  204009 gtcaatagtgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttccggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 203910  T
Q  117 atctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctc 216  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| |||||||| ||||||||||||||||    
T  203909 atctcccgctcggtgtaacatatcatcaagtcattttat-acacattgttgatcttgttgcacaatttagtcttgataattttcattgctgaaaaagctc 203811  T
Q  217 tttaaacggatgttgtcgacaccggcaatatcata 251  Q
    ||| ||||||||||||||| |||||||||||||||    
T  203810 tttcaacggatgttgtcgataccggcaatatcata 203776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 26540674 - 26540910
Alignment:
Q  20 aatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatc 119  Q
    |||||||||||| |||||||||||||||||||| |||||| ||||  |||||  |||||||||||||||||||||||  ||||||||||| |||||||||    
T  26540674 aatagcgtgctagataaaattaggaggtaaatgccctttctgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtgatttgaatatc 26540773  T
Q  120 tcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctcttt 219  Q
    ||| |||||||||||||||||||||| |||||| | ||| ||||||| || ||||||| ||||||| |||| ||||| || |||||||||||||||||||    
T  26540774 tcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaatttagtcttgataatcttcattgctgaaaaagctcttt 26540873  T
Q  220 aaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
     |||||||| |||||||||||||||||||| ||||||    
T  26540874 caacggatgctgtcgacaccggcaatatcaaagccaa 26540910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 32 - 222
Target Start/End: Complemental strand, 1280522 - 1280332
Alignment:
Q  32 aataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgctcggtg 131  Q
    ||||||||||||||||||||| | ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1280522 aataaaattaggaggtaaatgccttttccgagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtg 1280423  T
Q  132 taacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctctttaaa 222  Q
    |||||||||||||| |||||  | |||||||||||||| || |||| |||||||  ||| ||||| || |||| |||||||||||||||||    
T  1280422 taacatatcatcaaatcattgaaccacacattgttgatcttattgcgcaatttagacttgataatcttcattgttgaaaaagctctttaaa 1280332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 3055641 - 3055489
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||| ||||||||||||||||||||||||||| | |||  |||||||| ||  |  ||||||||||||||||||||||||||||| ||||||||||    
T  3055641 gtcaatagtgtgctaaataaaattaggaggtaaatgccatttatgagacctcattgcgcggaatgttcgaataatatcaacatcatcaaatgacttgaat 3055542  T
Q  117 atctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgat 169  Q
    |||||| ||||| ||||||||||||||||||||||  | ||||||| ||||||    
T  3055541 atctcccgctcgatgtaacatatcatcaagtcattgaaccacacatcgttgat 3055489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 22542043 - 22541911
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    ||||||||||||||||||||||| |||||||||| |||||||| ||||||||||  | ||||||||||||||||| ||||||||| ||||||||||||||    
T  22542043 caatagcgtgctaaataaaattatgaggtaaatgccctttccgcgacctctttcgagggaatgttcgaataatattaacatcatcgagtgacttgaatat 22541944  T
Q  119 ctcctgctcggtgtaacatatcatcaagtcatt 151  Q
    || | | ||| ||||||||||||||||||||||    
T  22541943 cttccgttcgatgtaacatatcatcaagtcatt 22541911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 27168821 - 27168941
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||| ||||||||||||||||||||||||||| |||||  |||||||| ||  |||||||||||||||||||||||||| ||||||||||||||||||    
T  27168821 caatagtgtgctaaataaaattaggaggtaaatgccctttatgagacctcatttcggtgaatgttcgaataatatcaacattatcaagtgacttgaatat 27168920  T
Q  119 ctcctgctcggtgtaacatat 139  Q
    |||| ||||||||||||||||    
T  27168921 ctcccgctcggtgtaacatat 27168941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 11852874 - 11852740
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||| ||||||||||||||||| ||||||||   |||||  |||||||||| || | |||||||||||||||||||||||||||||||| || |||    
T  11852874 gtcaatagtgtgctaaataaaattagaaggtaaatactctttcttagacctctttgtgttaaatgttcgaataatatcaacatcatcaagtgagttaaat 11852775  T
Q  117 atctcctgctcggtgtaacatatcatcaagtcatt 151  Q
    |||||| | ||||||||||||||||||||||||||    
T  11852774 atctcccgttcggtgtaacatatcatcaagtcatt 11852740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 22712917 - 22713017
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||| |||||||||||||||||||||||||||  ||||| |||||||||||  |||||||||| |||||||||||||||||||||||||| |||||||    
T  22712917 caatagtgtgctaaataaaattaggaggtaaatgctctttctgagacctctttgcggtgaatgtttgaataatatcaacatcatcaagtgacatgaatat 22713016  T
Q  119 c 119  Q
    |    
T  22713017 c 22713017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 8785931 - 8785782
Alignment:
Q  27 tgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgct 126  Q
    |||||||||||||||||||||||    ||||| |||||||| |||  ||||||||||||||||||||||| |||||||| ||| |||||||||||| |||    
T  8785931 tgctaaataaaattaggaggtaagaacccttttcgagacctatttgcggtgaatgttcgaataatatcaatatcatcaactgaattgaatatctcccgct 8785832  T
Q  127 cggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
     | ||||| |||| |||||||||||  | ||||||| |||||| ||||||    
T  8785831 tgatgtaatatattatcaagtcattgaaccacacatcgttgatcttgttg 8785782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 23244586 - 23244745
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||| ||| ||||||||||||| ||||| ||| |||||| |||||||| ||  ||| ||||||| |||||||||||||||||||||||||| ||||    
T  23244586 gtcaatagtgtggtaaataaaattagcaggtacatgccctttctgagacctcgttgcggttaatgttcaaataatatcaacatcatcaagtgactagaat 23244685  T
Q  117 atctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    | || | |||||   ||||||||||||||||||||  |  |||||| |||||| ||||||    
T  23244686 aacttccgctcgacataacatatcatcaagtcattgaacgacacatcgttgatcttgttg 23244745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 19518970 - 19519053
Alignment:
Q  29 ctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgactt 112  Q
    ||||||||||||||| |||||||| ||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||    
T  19518970 ctaaataaaattaggtggtaaatgacctttccaatacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgactt 19519053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 2229072 - 2228957
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgaga-cctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaata 117  Q
    |||||||||||||||||||||||||||||||||| |||| || ||| |||||||  | ||||||||| |||||||||||||||||||| |||||| ||||    
T  2229072 caatagcgtgctaaataaaattaggaggtaaatgccctt-cctagaacctctttgcgatgaatgttcaaataatatcaacatcatcaaatgacttaaata 2228974  T
Q  118 tctcctgctcggtgtaa 134  Q
    ||| | |||| ||||||    
T  2228973 tcttccgctcagtgtaa 2228957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 203772 - 203708
Alignment:
Q  225 gatgttgtcgacaccggcaatatcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  203772 gatgttgtcgataccggcaatatcatagccaaactttgaacatcttcacaagaagaaaaagaagc 203708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 38269393 - 38269464
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctg 74  Q
    ||||||||||||| | |||||| |||| |||||||||||||||||||||||| ||||  | |||||||||||    
T  38269393 agagagatgaacctgccaatagtgtgccaaataaaattaggaggtaaatgtcttttctaacacctctttctg 38269464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 192131 - 192063
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctcttt 71  Q
    |||||||||||||  ||||||| ||| ||||||||||||| |||||||| || ||||||| ||||||||    
T  192131 agagagatgaacctatcaatagtgtgttaaataaaattagaaggtaaatatcttttccgaaacctcttt 192063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 28801476 - 28801420
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttc 59  Q
    ||||||||||||| |||||||| | |||||||||||||||||| |||||||| ||||    
T  28801476 agagagatgaacctgtcaatagtgagctaaataaaattaggagttaaatgtcttttc 28801420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 31680537 - 31680500
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  31680537 agagagatgaacccgtcaatagtgtgctaaataaaatt 31680500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 33430491 - 33430454
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  33430491 agagagatgaacccgtcaatagtgtgctaaataaaatt 33430454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 26540967 - 26541009
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  26540967 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 26541009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 10034097 - 10034060
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  10034097 agagacatgaacccgtcaatagtgtgctaaataaaatt 10034060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 12278857 - 12278894
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  12278857 agagagatgaacctgtcaatagtgtgctaaataaaatt 12278894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 17332548 - 17332585
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  17332548 agagagatgaatccgtcaatagtgtgctaaataaaatt 17332585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 36291541 - 36291504
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  36291541 agagagatgaacccgtcaatagtgtgttaaataaaatt 36291504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 37254811 - 37254774
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||  |||||||||||||||    
T  37254811 agagagatgaacccgtcaataatgtgctaaataaaatt 37254774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 39657503 - 39657540
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  39657503 agagacatgaacccgtcaatagtgtgctaaataaaatt 39657540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 134871 - 135109
Alignment:
Q  18 tcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaata 117  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  134871 tcaatagcgtgctaaataaaattaggaggtaaatgccctttccgagacctctttccggtgaatgttcgaataatatcaacatcatcaagtgacttgaata 134970  T
Q  118 tctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctct 217  Q
    ||||| ||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||||| |||| ||||| || |||||||||||||||||    
T  134971 tctcccgctcggtgtaacatatcatcaagtcatttaaccacacattgttcatcttgttgcacaatttagtcttgataatcttcattgctgaaaaagctct 135070  T
Q  218 ttaaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
    || |||||||| ||| |||||||||||||||| ||||||    
T  135071 ttcaacggatgctgttgacaccggcaatatcaaagccaa 135109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 135166 - 135208
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  135166 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 135208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 26493725 - 26493962
Alignment:
Q  12 aacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgact 111  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  26493725 aacctgtcaatagcgtgctaaataaaattaggaggtaaatgccctttccgagacctctttacggtgaatgttcgaataatatcaacatcatcaagtgact 26493824  T
Q  112 tgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaa 211  Q
    ||||||||||| |||||||||||| |||||||||||||||| | ||||||||||| || ||||||| ||||||| |||| ||||| || |||||||||||    
T  26493825 tgaatatctcccgctcggtgtaacgtatcatcaagtcatttaaccacacattgttcatcttgttgcgcaatttagtcttgataatcttcattgctgaaaa 26493924  T
Q  212 agctctttaaacggatgttgtcgacaccggcaatatca 249  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  26493925 agctctttcaacggatgctgtcgacaccggcaatatca 26493962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 27387317 - 27387561
Alignment:
Q  12 aacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgact 111  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  27387317 aacctgtcaatagcgtgctaaataaaattaggaggtaaatgctctttccgcgacctctttcgagtgaatgttcgaataatatcaacatcatcaagtgact 27387416  T
Q  112 tgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaa 211  Q
    ||||||||||| ||||||||||||||||||||||||||||  | |||||||||||||| ||||||| ||||||| |||| ||||| || |||||||||||    
T  27387417 tgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttagtcttaataatcttcattgctgaaaa 27387516  T
Q  212 agctctttaaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
    |||||||| |||||| | |||||||||||||||||||| ||||||    
T  27387517 agctctttcaacggaagctgtcgacaccggcaatatcaaagccaa 27387561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 19400135 - 19399898
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  19400135 caatagcgtgctaaataaaattaggaggtaaataccctttccgcgacctctttcgagtgaatgttcgaataatatcaacatcatcaagcgacttgaatat 19400036  T
Q  119 ctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctctt 218  Q
    |||| ||||||||||||||||||||||||||||  | |||||||||||||| ||||||| ||||||| |||| ||||| || |||| |||||||||||||    
T  19400035 ctcccgctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttagtcttgataatcttcattgttgaaaaagctctt 19399936  T
Q  219 taaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
    | |||||| ||||||||||| |||||||||| ||||||    
T  19399935 tcaacggaagttgtcgacactggcaatatcaaagccaa 19399898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 38575300 - 38575544
Alignment:
Q  12 aacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgact 111  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  38575300 aacctgtcaatagcgtgctaaataaaattaggaggtaaatgttctttccgcgacctctttcgagtgaatgttcgaataatatcaacatcatcaagtgact 38575399  T
Q  112 tgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaa 211  Q
    | ||||||||| ||||||||||||||||||||||||| ||  | ||| |||||||||| ||||||| ||||||| |||| ||||| || |||| ||||||    
T  38575400 ttaatatctcccgctcggtgtaacatatcatcaagtcgttcaaccacccattgttgatattgttgcgcaatttagtcttaataatcttcattgttgaaaa 38575499  T
Q  212 agctctttaaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
    |||||||| |||||| | |||||||||||||||||||| ||||||    
T  38575500 agctctttcaacggaagctgtcgacaccggcaatatcaaagccaa 38575544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 45197800 - 45197624
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||| ||||||||||||||||||| ||||||| |||  ||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||    
T  45197800 caatagggtgctaaataaaattaggatgtaaatgccctccccgagacctctttgtggtgaatgttcgaacaatatcaacatcgtcaagtgacttgaatat 45197701  T
Q  119 ctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataat 196  Q
    |||||||||| || || ||||||||||||||||  | |||||||||||||| ||||||| |||||||||||| |||||    
T  45197700 ctcctgctcgatg-aatatatcatcaagtcattgaaccacacattgttgatcttgttgcgcaatttaatcttgataat 45197624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 9230560 - 9230409
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||| ||||||||||||||||||||||||||| ||||| ||| ||||||||  | |||||||||||||||||||||||||||||| |||||||| |    
T  9230560 gtcaatagtgtgctaaataaaattaggaggtaaatgcccttttcgatacctctttgcgatgaatgttcgaataatatcaacatcatcaaatgacttgagt 9230461  T
Q  117 atctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttga 168  Q
    |||||| ||||  ||||||||||||||||||||||  | ||||||| |||||    
T  9230460 atctcccgctctatgtaacatatcatcaagtcattgaaccacacatcgttga 9230409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 23179902 - 23180060
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||| ||||||||| |||||||||| |||||| ||||||| ||||||||||  |||||||||||||||||||||||||| |||||||| |||||||    
T  23179902 gtcaatagtgtgctaaattaaattaggag-taaatgccctttccaagacctctttgcggtgaatgttcgaataatatcaacattatcaagtgccttgaat 23180000  T
Q  117 atctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    |||||  |||||||||||||||||||||||| |||  | ||||||| |||||| ||||||    
T  23180001 atctctcgctcggtgtaacatatcatcaagttattgaaacacacatcgttgatcttgttg 23180060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 8638770 - 8638614
Alignment:
Q  21 atagcgtgctaaataaaattaggaggtaaatgtcctttccgagacc-tctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatc 119  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||| |||||  | ||||||||||||||||||| | |||||||| |||||||||||||    
T  8638770 atagtgtgctaaataaaattaggaggtaaatgccctttccgagaccctctttgcgttgaatgttcgaataatatcgatatcatcaaatgacttgaatatc 8638671  T
Q  120 tcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    || || ||||| |||||||||||||||| |||  | ||||| | |||||| ||||||    
T  8638670 tcttgttcggtataacatatcatcaagtaattaaaccacacgtcgttgatcttgttg 8638614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 14088907 - 14088815
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtga 109  Q
    |||||||| ||||||||||||||||||||||||||| | ||||||||||||||||  | || ||||| ||||||||||| |||||||||||||    
T  14088907 gtcaatagtgtgctaaataaaattaggaggtaaatgccttttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 14088815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 14398925 - 14398833
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtga 109  Q
    |||||||| ||||||||||||||||||||||||||| | ||||||||||||||||  | || ||||| ||||||||||| |||||||||||||    
T  14398925 gtcaatagtgtgctaaataaaattaggaggtaaatgccttttccgagacctctttgcgatggatgtttgaataatatcagcatcatcaagtga 14398833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 18375554 - 18375431
Alignment:
Q  26 gtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgc 125  Q
    |||||||||  |||||||| ||||||| ||||| ||||||||  |||   |||||||||||||||||||||||| ||| ||||| |||||||||||| ||    
T  18375554 gtgctaaatcgaattaggaagtaaatgcccttttcgagacct--ttcgcatgaatgttcgaataatatcaacattatctagtgatttgaatatctcccgc 18375457  T
Q  126 tcggtgtaacatatcatcaagtcatt 151  Q
    ||  ||||| ||||||||||||||||    
T  18375456 tccatgtaatatatcatcaagtcatt 18375431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 43728096 - 43728003
Alignment:
Q  76 tgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgat 169  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||| | ||| | ||||||||||||||||||||  | ||||||| ||||||    
T  43728096 tgaatgtttgaataatatcaacatcatcaactgacttgaatatctcccgttcgatataacatatcatcaagtcattgaaccacacatcgttgat 43728003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 10868453 - 10868513
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgag 63  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  10868453 agagagatgaacccgtcaaaagtgtgctaaataaaattaggaggtaaatgtcttttccgag 10868513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 25491650 - 25491742
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtga 109  Q
    |||||||| ||| |||||||||| |||| ||||||| | |||  |||||||||||   |||||||||||||||||||||||||||||||||||    
T  25491650 gtcaatagtgtgataaataaaatcaggaagtaaatgccttttttgagacctctttacagtgaatgttcgaataatatcaacatcatcaagtga 25491742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 25024682 - 25024596
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatc 103  Q
    ||||||| | |||| ||||||||||||||||||||| |||||| ||||||||||| |||||||||| ||||   |||||||||||||    
T  25024682 gtcaataacatgcttaataaaattaggaggtaaatgccctttctgagacctctttgtggtgaatgtccgaaacttatcaacatcatc 25024596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 9557844 - 9557784
Alignment:
Q  20 aatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaat 80  Q
    ||||| ||||||||||||||||||||||||||  |||||| |||||||||||  |||||||    
T  9557844 aatagtgtgctaaataaaattaggaggtaaatcccctttcagagacctctttgcggtgaat 9557784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 26782330 - 26782375
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgag 63  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||    
T  26782330 gtcaatagtgtgctaaataaaattaggaggtaaatgt-ctttccgag 26782375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 7002895 - 7002858
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  7002895 agagagatgaacccgtcaatagtgtgctaaataaaatt 7002858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 7048766 - 7048729
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  7048766 agagagatgaacccgtcaatagtgtgctaaataaaatt 7048729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 26624916 - 26624879
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26624916 agagagatgaacccgtcaatagtgtgctaaataaaatt 26624879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 36658351 - 36658314
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  36658351 agagagatgaacccgtcaatagtgtgctaaataaaatt 36658314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 37002141 - 37002178
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  37002141 agagagatgaacccgtcaatagtgtgctaaataaaatt 37002178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 40920000 - 40920037
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  40920000 agagagatgaacccgtcaatagtgtgctaaataaaatt 40920037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 43184465 - 43184502
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  43184465 agagagatgaacccgtcaatagtgtgctaaataaaatt 43184502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 19399841 - 19399799
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  19399841 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 19399799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 26494026 - 26494068
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  26494026 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 26494068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 27387618 - 27387660
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  27387618 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 27387660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 3114093 - 3114130
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  3114093 agagacatgaacccgtcaatagtgtgctaaataaaatt 3114130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 5555657 - 5555620
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  5555657 agagacatgaacccgtcaatagtgtgctaaataaaatt 5555620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 8394295 - 8394258
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  8394295 agagagataaacccgtcaatagtgtgctaaataaaatt 8394258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 35090338 - 35090301
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  35090338 agagagatgaatccgtcaatagtgtgctaaataaaatt 35090301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 36630986 - 36630949
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  36630986 agagagatgaacccgtcaatagtgtgctaactaaaatt 36630949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 38638237 - 38638270
Alignment:
Q  7 agatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||| |||||||||||||||    
T  38638237 agatgaacccgtcaatagtgtgctaaataaaatt 38638270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 33685732 - 33685696
Alignment:
Q  5 agagatgaacccgtcaatagcgtgctaaataaaatta 41  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  33685732 agagataaacccgtcaatagtgtgctaaataaaatta 33685696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 282
Target Start/End: Original strand, 38575601 - 38575637
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaa 282  Q
    |||||||||||||||||||||| ||||||||||||||    
T  38575601 tcatagccaaactttgaacatcttcacaagaagaaaa 38575637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 25 - 256
Target Start/End: Complemental strand, 24074563 - 24074332
Alignment:
Q  25 cgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggt-gaatgttcgaataatatcaacatcatcaagtgacttgaatatctcct 123  Q
    |||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||     
T  24074563 cgtgctaaataaaattaggaggtaaatgtcatt-ccgagacctctttccggttgaatgttcgaataatatcaacatcatcaagtaacttgaatatctccc 24074465  T
Q  124 gctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctctttaaac 223  Q
     |||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||| ||| || |||||||||||||||||||||||    
T  24074464 cctcggtgtaacatatcatcaagtcattttaccacacattgttgatcttgttgcgcaatttagtcttcacaatcttcattgctgaaaaagctctttaaac 24074365  T
Q  224 ggatgttgtcgacaccggcaatatcatagccaa 256  Q
    |||||||||||||||||||||||||| ||||||    
T  24074364 ggatgttgtcgacaccggcaatatcaaagccaa 24074332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 11971123 - 11970967
Alignment:
Q  12 aacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgact 111  Q
    |||| |||||||| ||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  11971123 aacctgtcaatagtgtgctaaataaaattaggaggtaaatgccctttctgagacctctttc-ggtgaatgttcgcaaaatatcaacatcatcaagtgact 11971025  T
Q  112 tgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgat 169  Q
    ||||||||| | |||||||||||||||| |||||||||||  | ||||||| ||||||    
T  11971024 tgaatatcttccgctcggtgtaacatatgatcaagtcattgaaccacacatcgttgat 11970967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 12180536 - 12180700
Alignment:
Q  12 aacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgact 111  Q
    |||| |||||||  ||||||||||||||||| ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  12180536 aacctgtcaataatgtgctaaataaaattagaaggtaaatgcccttcccgagacctctttgcggtgaatgttcgaataatatcaacaacatcaagtgact 12180635  T
Q  112 tgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    ||||| |||||  |||||||||||||||||||||||||||  | |||||| ||||||| ||||||    
T  12180636 tgaatttctcccactcggtgtaacatatcatcaagtcattgaaccacacaatgttgatcttgttg 12180700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 3051022 - 3050902
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||| |||||||||||||||||| ||||||||  |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  3051022 gtcaatagtgtgctaaataaaattaggtggtaaatgctctttccgagacctctttccggtgaatgtttgaataatatcaacatcatcaagtgacttgaat 3050923  T
Q  117 atctcctgctcggtgtaacat 137  Q
    |||||| ||||||||||||||    
T  3050922 atctcccgctcggtgtaacat 3050902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 32 - 176
Target Start/End: Complemental strand, 25340589 - 25340445
Alignment:
Q  32 aataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgctcggtg 131  Q
    |||||||||||||||||||||  ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |  || ||||    
T  25340589 aataaaattaggaggtaaatgcactttctgagacctctttatggtgaatgttcgaataatatcaacatcatcaagtgacttaaatatcttccactgggtg 25340490  T
Q  132 taacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    |||||||||||||| ||| || |||||||||  ||||| ||||||    
T  25340489 taacatatcatcaaatcacttaatcacacatcattgatcttgttg 25340445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 30621318 - 30621227
Alignment:
Q  30 taaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||    
T  30621318 taaataaaattaggaggtaaatgtcctttccgagacctctttc-gatgaatgttcgaataatatcaacatcatcaagtgacttgattatctcc 30621227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 25599312 - 25599177
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttc---tggtgaatgttcgaataatatcaacatcatcaagtgacttgaa 115  Q
    |||||| ||| ||||| ||||||||| ||||||| ||||||||||||||||||    || |||||||||||||||||||||||||||||||||||||||     
T  25599312 caatagtgtgttaaatcaaattaggacgtaaatgccctttccgagacctctttgcgatgatgaatgttcgaataatatcaacatcatcaagtgacttgat 25599213  T
Q  116 tatctcctgctcggtgtaacatatcatcaagtcatt 151  Q
    |||||||  |||| ||||||||| ||||||||||||    
T  25599212 tatctcccactcgatgtaacataccatcaagtcatt 25599177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 1296664 - 1296556
Alignment:
Q  21 atagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatct 120  Q
    |||| ||| |||||||||| |||||||||||| |||||||||||||||||| | |||||| || ||||||||| || |||||||||||||||||||||||    
T  1296664 atagtgtggtaaataaaataaggaggtaaatggcctttccgagacctctttattgtgaatatttgaataatattaatatcatcaagtgacttgaatatct 1296565  T
Q  121 cctgctcgg 129  Q
    || ||||||    
T  1296564 cccgctcgg 1296556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 32441999 - 32442121
Alignment:
Q  26 gtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgc 125  Q
    |||||||||||||||| |||||||||| ||||||||| ||||||||  | ||||||||||||||||||||||||||||||||||  | | ||||| | ||    
T  32441999 gtgctaaataaaattaagaggtaaatgccctttccgatacctctttgggatgaatgttcgaataatatcaacatcatcaagtga--ttattatcttccgc 32442096  T
Q  126 tcggtgtaacatatcatcaagtcatt 151  Q
    ||| ||||||||||||| ||||||||    
T  32442097 tcgatgtaacatatcat-aagtcatt 32442121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 18339276 - 18339239
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  18339276 agagagatgaacccgtcaatagtgtgctaaataaaatt 18339239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 28996900 - 28996863
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  28996900 agagagatgaacccgtcaatagtgtgctaaataaaatt 28996863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 13837991 - 13837954
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  13837991 agagacatgaacccgtcaatagtgtgctaaataaaatt 13837954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 34948755 - 34948792
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  34948755 agagacatgaacccgtcaatagtgtgctaaataaaatt 34948792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 24 - 256
Target Start/End: Complemental strand, 31989181 - 31988949
Alignment:
Q  24 gcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcct 123  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||     
T  31989181 gcgtgctaaataaaattaggaggtaaatgccctttccgcgacctctttcgagtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctccc 31989082  T
Q  124 gctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctctttaaac 223  Q
    ||||||||||||||||||||||||||||  | |||||||||||||| ||||||| ||||||| |||| ||||| || ||||||||||||||||||| |||    
T  31989081 gctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttagtcttaataatcttcattgctgaaaaagctctttcaac 31988982  T
Q  224 ggatgttgtcgacaccggcaatatcatagccaa 256  Q
    ||| | |||||||||||||||||||| ||||||    
T  31988981 ggaagctgtcgacaccggcaatatcaaagccaa 31988949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 53710562 - 53710318
Alignment:
Q  12 aacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgact 111  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  53710562 aacctgtcaatagcgtgctaaataaaattaggaggtaaatgccctttccgtgacctctttcgagtgaatgttcgaataatatcaacatcatcaagtgact 53710463  T
Q  112 tgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaa 211  Q
    ||||||||||| ||||||||||||| ||||||||||||||  | ||  |||||||||| ||||||| ||||||| |||| ||||| || |||||||||||    
T  53710462 tgaatatctcccgctcggtgtaacagatcatcaagtcattcaaccatccattgttgatcttgttgcgcaatttagtcttgataatcttcattgctgaaaa 53710363  T
Q  212 agctctttaaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
    |||||||| |||||||| |||||||||||||||||||| ||||||    
T  53710362 agctctttcaacggatgctgtcgacaccggcaatatcaaagccaa 53710318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 24908412 - 24908648
Alignment:
Q  20 aatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatc 119  Q
    ||||||||||||||||||||||||||||||||  |||||||| ||||||||||  |||||||||||||||||||||||||| ||||| ||||||||||||    
T  24908412 aatagcgtgctaaataaaattaggaggtaaataccctttccgcgacctctttcgagtgaatgttcgaataatatcaacatcttcaagcgacttgaatatc 24908511  T
Q  120 tcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctcttt 219  Q
    ||||||| ||||||||||||||||||||||||  | |||||||||||||| ||||||| ||||||| |||| ||||| || |||||||||||||||||||    
T  24908512 tcctgcttggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttactcttgataatcttcattgctgaaaaagctcttt 24908611  T
Q  220 aaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
     |||| | |||||||||||  ||||||||| ||||||    
T  24908612 caacgaaagttgtcgacacaagcaatatcaaagccaa 24908648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 37381880 - 37382124
Alignment:
Q  12 aacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgact 111  Q
    |||| |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||   ||||||||||||||||||| ||||||||||| |||||    
T  37381880 aacctgtcaatagcgtgctgaataaaattaggaggcaaatgtcatttccgagacctctttgcagtgaatgttcgaataatataaacatcatcaaatgact 37381979  T
Q  112 tgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaa 211  Q
    |||||||||| ||||| |||||| |||||||| |||||||| | ||||||| |||||| |||||||  ||||||  ||| ||||| || |||||||||||    
T  37381980 tgaatatctcatgctcagtgtaatatatcatcgagtcatttaaccacacatcgttgatcttgttgcgaaatttagacttgataatcttcattgctgaaaa 37382079  T
Q  212 agctctttaaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
    |||||||| |||||||||||||||||||| ||||| || ||||||    
T  37382080 agctctttcaacggatgttgtcgacaccgacaataccaaagccaa 37382124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 43137283 - 43137047
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||| ||||||||||||||||||||||||||  | |||| |||||||||| | || ||||||||||||||||||||||||||||||||||||||||||    
T  43137283 caatagtgtgctaaataaaattaggaggtaaataccttttctgagacctcttgc-ggcgaatgttcgaataatatcaacatcatcaagtgacttgaatat 43137185  T
Q  119 ctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctctt 218  Q
    |||| ||||||||||||||||||||||||||||  | || |||| |||||| ||||||| |||||||   || ||||| || |||||| |||||||||||    
T  43137184 ctcccgctcggtgtaacatatcatcaagtcattgaaccatacatcgttgatcttgttgcgcaatttagagttgataatcttcattgctaaaaaagctctt 43137085  T
Q  219 taaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
    | ||||||||||||||| || |||||||||| ||||||    
T  43137084 tcaacggatgttgtcgatacaggcaatatcaaagccaa 43137047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 51262143 - 51261979
Alignment:
Q  12 aacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgact 111  Q
    |||| |||||||| |||||||||||||||||||||||||||| |||| | ||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  51262143 aacctgtcaatagtgtgctaaataaaattaggaggtaaatgttcttttcaagacctctttacgatgaatgttcgaataatatcaacatcatcaagtgact 51262044  T
Q  112 tgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    ||||||||| | |||  ||||||||||||||||| ||||| || ||||| | |||||| ||||||    
T  51262043 tgaatatcttccgcttagtgtaacatatcatcaattcattgtaccacacttcgttgatcttgttg 51261979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 3856901 - 3857044
Alignment:
Q  26 gtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgc 125  Q
    |||||||||||||||||||||||||| | ||||| |||||||||||  |||||||||| ||||||||||||||||||||| ||||||||||||||||  |    
T  3856901 gtgctaaataaaattaggaggtaaattttctttctgagacctctttgcggtgaatgtttgaataatatcaacatcatcaaatgacttgaatatctcccac 3857000  T
Q  126 tcggtgtaacatatcatcaagtcattttatcacacattgttgat 169  Q
    || | ||||||| |||||||||||||| | ||||||| ||||||    
T  3857001 tctgagtaacatgtcatcaagtcatttaaccacacatcgttgat 3857044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 15668111 - 15667973
Alignment:
Q  38 attaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgctcggtgtaacat 137  Q
    ||||||||||||||| | ||||||| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  15668111 attaggaggtaaatgccttttccgatacctctttgttgtgcatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtataacat 15668012  T
Q  138 atcatcaagtcattttatcacacattgttgattttgttg 176  Q
    |||||||||| |||  | |||||||  ||||| ||||||    
T  15668011 atcatcaagttattgaaccacacatccttgatcttgttg 15667973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 24988831 - 24988917
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaa 105  Q
    |||||| |||||||||||||||||||| || ||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  24988831 caatagtgtgctaaataaaattaggagatacatgccctttccgagacctctttgcggtgaatgttcgaataatatcaacatcatcaa 24988917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 22934828 - 22934910
Alignment:
Q  30 taaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgactt 112  Q
    |||| ||||||| |||||||||| ||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  22934828 taaacaaaattaagaggtaaatgacctttccgagacctctttgcggtgaatgttctaataatatcaacatcatcaagtgactt 22934910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 43585965 - 43585842
Alignment:
Q  20 aatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatc 119  Q
    ||||||||||||||||||||||||||||||||||| ||||   || |||||||  ||||||        ||||| |||||| |||||| ||||| |||||    
T  43585965 aatagcgtgctaaataaaattaggaggtaaatgtcttttctacgatctctttcgagtgaat--------aatattaacatcgtcaagtaacttggatatc 43585874  T
Q  120 tcctgctcggtgtaacatatcatcaagtcatt 151  Q
    ||| ||||||||||||||||||||||||||||    
T  43585873 tcccgctcggtgtaacatatcatcaagtcatt 43585842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 5135458 - 5135410
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaattaggaggtaaat 51  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  5135458 agagagatgaacccgtcaatagtgtgctaaataaaattatgaggtaaat 5135410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 51408625 - 51408667
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttc 59  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  51408625 gtcaatagcgtgctaaataaaattaggaggtaaatgccctttc 51408667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 38282580 - 38282512
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctcttt 71  Q
    |||||||||||||    ||||| |||||||||||||||| ||||||||||  |||||||||||||||||    
T  38282580 agagagatgaacctcataatagtgtgctaaataaaattatgaggtaaatgctctttccgagacctcttt 38282512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 33041123 - 33041086
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  33041123 agagagatgaacccgtcaatagtgtgctaaataaaatt 33041086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 45183151 - 45183114
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  45183151 agagagatgaacccgtcaatagtgtgctaaataaaatt 45183114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 24908705 - 24908747
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  24908705 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 24908747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 31988892 - 31988850
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  31988892 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 31988850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 53710261 - 53710219
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  53710261 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 53710219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 6930891 - 6930928
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  6930891 agagagatgaactcgtcaatagtgtgctaaataaaatt 6930928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 11018209 - 11018246
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||| | |||||||||||||||    
T  11018209 agagagatgaacccgtcaattgtgtgctaaataaaatt 11018246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 22922265 - 22922228
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  22922265 agagagatgaacccgtcaatagtgtgttaaataaaatt 22922228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 27935348 - 27935311
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  27935348 agagagatgaacccgtcaatagtatgctaaataaaatt 27935311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 34084119 - 34084156
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  34084119 agagagatgaacccatcaatagtgtgctaaataaaatt 34084156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 35514432 - 35514395
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  35514432 agagagatgaacccgtcaatagtgtgcaaaataaaatt 35514395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 40081738 - 40081774
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaat 39  Q
    |||||||||||||||||||||| |||||||| |||||    
T  40081738 agagagatgaacccgtcaatagtgtgctaaaaaaaat 40081774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 30791469 - 30791713
Alignment:
Q  12 aacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgact 111  Q
    |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||||||||||||||||  |||||||||||||    
T  30791469 aacctgtcaatagcgtgctaaataaaattaggtggtaaatgccctttccgagacctctttgcggtgaatgttcgaataatatcaatgtcatcaagtgact 30791568  T
Q  112 tgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaa 211  Q
    ||||||||||| ||||||||||||||||||||||||||||  | ||| |||| ||||| ||||||| |||||||||||| ||||| || |||||||||||    
T  30791569 tgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccactcattcttgatcttgttgcgcaatttaatcttgataatcttcattgctgaaaa 30791668  T
Q  212 agctctttaaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
    |||||||| || |||||  ||||||||||||||||||| ||||||    
T  30791669 agctctttcaatggatgcagtcgacaccggcaatatcaaagccaa 30791713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 21958669 - 21958432
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||||||||   || |||||||||||||||||||||||||||||||||| ||||||    
T  21958669 caatagcgtgctaaataaaattaggaggtaaattccctttccgcgacctcttttgagttaatgttcgaataatatcaacatcatcaagtgactcgaatat 21958570  T
Q  119 ctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctctt 218  Q
    |||||||||||||||||||||||||||||||||  | |||| ||||||||| |||||||  |||||| |||| ||||| || |||| |||||||||||||    
T  21958569 ctcctgctcggtgtaacatatcatcaagtcattcaaccacatattgttgatcttgttgcgtaatttagtcttgataatcttcattggtgaaaaagctctt 21958470  T
Q  219 taaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
    | |||||| ||||||||||| |||||||||| ||||||    
T  21958469 tcaacggaagttgtcgacactggcaatatcaaagccaa 21958432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 16532649 - 16532879
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||||||||||||||||||||||||||||||| ||||||||| | ||||||  |||||||||| ||||||||||||||||||||||||||||||||||    
T  16532649 caatagcgtgctaaataaaattaggaggtaaatgccctttccgatatctctttgcggtgaatgtttgaataatatcaacatcatcaagtgacttgaatat 16532748  T
Q  119 ctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctctt 218  Q
    |||   || ||| ||||||||||||||||||||  | ||||||| |||||| ||||||   |||||| |||| ||||| || ||||||||||||||||||    
T  16532749 ctctcacttggtataacatatcatcaagtcattgaaccacacatcgttgatcttgttgtgtaatttagtcttgataatcttcattgctgaaaaagctctt 16532848  T
Q  219 taaacggatgttgtcgacaccggcaatatca 249  Q
    || ||||||||||||||||||  ||||||||    
T  16532849 tacacggatgttgtcgacaccaacaatatca 16532879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 9256548 - 9256414
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||  | ||||||||||||| |||||||||||||||||||||||||||    
T  9256548 gtcaatagtgtgctaaataaaattaggaggtaaatgtcatttgcgagacctctttgcgatgaatgttcgaattatatcaacatcatcaagtgacttgaat 9256449  T
Q  117 atctcctgctcggtgtaacatatcatcaagtcatt 151  Q
    |||||| ||||| ||||||||||||||||||||||    
T  9256448 atctcccgctcgatgtaacatatcatcaagtcatt 9256414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 13152410 - 13152544
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||  | |||||||| |||||||| |||||||||||| ||||||||||    
T  13152410 gtcaatagtgtgctaaataaaattaggaggtaaatgccctttccgagacctctttgcgatgaatgttggaataataccaacatcatcaaatgacttgaat 13152509  T
Q  117 atctcctgctcggtgtaacatatcatcaagtcatt 151  Q
    |||||| ||||| ||||||||||||||||||||||    
T  13152510 atctcccgctcgatgtaacatatcatcaagtcatt 13152544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 14446990 - 14446857
Alignment:
Q  18 tcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaata 117  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||   ||||||||| |||||||||||||||||||||||||||||||||    
T  14446990 tcaatagtgtgctaaataaaattaggaggtgaatgtcctttccgagacctctttgcagtgaatgttagaataatatcaacatcatcaagtgacttgaata 14446891  T
Q  118 tctcctgctcggtgtaacatatcatcaagtcatt 151  Q
    ||||   || ||||||||||||||||||||||||    
T  14446890 tctctctcttggtgtaacatatcatcaagtcatt 14446857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 27190928 - 27190772
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||| || ||||||||||||||||||||||||||||||| ||||| |||||  ||||||| ||||| |||||||||||||||||||||||||||||||    
T  27190928 caatagtgtactaaataaaattaggaggtaaatgtcctttctgagacatctttgcggtgaatattcgagtaatatcaacatcatcaagtgacttgaatat 27190829  T
Q  119 ctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgtt 175  Q
    |||| ||| |||| |||||||||||||||||||  | ||||||| |||||| |||||    
T  27190828 ctcccgctaggtgcaacatatcatcaagtcattgaaccacacatcgttgatcttgtt 27190772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 24333881 - 24333714
Alignment:
Q  12 aacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaat---gttcgaataatatcaacatcatcaagtg 108  Q
    |||| |||||||| |||||||||||||| | |||||||||   ||||||||||||||||| ||||||||   ||||||||||||| ||||||||||||||    
T  24333881 aaccggtcaatagtgtgctaaataaaatcatgaggtaaattctctttccgagacctctttgtggtgaataatgttcgaataatattaacatcatcaagtg 24333782  T
Q  109 acttgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    |||||||||||||| |||| |||||||||||||| ||||||||  |||| |||| |||||| ||||||    
T  24333781 acttgaatatctcccgctcagtgtaacatatcataaagtcattgaatcatacatcgttgatcttgttg 24333714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 10014451 - 10014571
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||  ||||||||||||||||||||||||||| ||||||| | | ||||||| |||||||||| |||||||||||||||||||||||||| |||||    
T  10014451 gtcaataatgtgctaaataaaattaggaggtaaatgccctttccaaaatctctttccggtgaatgtttgaataatatcaacatcatcaagtgacatgaat 10014550  T
Q  117 atctcctgctcggtgtaacat 137  Q
    |||| | ||||||||||||||    
T  10014551 atcttccgctcggtgtaacat 10014571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 32372115 - 32372022
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgactt 112  Q
    |||||| ||||||||||||||||||||||||||| |||||  |||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  32372115 caatagtgtgctaaataaaattaggaggtaaatgacctttttgagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgactt 32372022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 40146028 - 40146116
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagt 107  Q
    |||||| ||||||||||||||||||||||| ||| | |||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  40146028 caatagtgtgctaaataaaattaggaggtagatgccatttccgagacctctttgttgtgaatgttcgaataatatcaacatcatcaagt 40146116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 32359579 - 32359486
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgactt 112  Q
    |||||| ||||||||||||||||||||||||||| | |||  |||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  32359579 caatagtgtgctaaataaaattaggaggtaaatgacatttttgagacctctttgcagtgaatgttcgaataatatcaacatcatcaagtgactt 32359486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 32342966 - 32342880
Alignment:
Q  26 gtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgactt 112  Q
    ||||||||||||||||||||||||||| |||||  ||||||| |||   ||||||||||||||||||||||||||||||||||||||    
T  32342966 gtgctaaataaaattaggaggtaaatgacctttttgagacctttttgcagtgaatgttcgaataatatcaacatcatcaagtgactt 32342880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 32355453 - 32355367
Alignment:
Q  26 gtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgactt 112  Q
    ||||||||||||||||||||||||||| |||||  ||||||| |||   ||||||||||||||||||||||||||||||||||||||    
T  32355453 gtgctaaataaaattaggaggtaaatgacctttttgagacctttttgcagtgaatgttcgaataatatcaacatcatcaagtgactt 32355367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 10467861 - 10467789
Alignment:
Q  79 atgttcgaataatatcaacatcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcatt 151  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||    
T  10467861 atgttcgaataatatcaacatcatcaaatgacttgattatctcccgctcgatgtaacatatcatcaagtcatt 10467789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 28846720 - 28846621
Alignment:
Q  74 ggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttg 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||   | ||||||||||||||  | ||||||| |||||| |||    
T  28846720 ggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcgatgt---acatcatcaagtcattgaaccacacatcgttgatcttg 28846624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 34228245 - 34228338
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgac 110  Q
    |||||||  ||| |||||||||| ||||||||||||   ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||    
T  34228245 gtcaataatgtgataaataaaatgaggaggtaaatgcaatttccaagacctctttgtggtaaatgttcgaataatatcaacatcatcaagtgac 34228338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 40470472 - 40470528
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttc 59  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  40470472 agagagatgaacccgtcaatagtgtgctaaataaaattagaaggtaaatgtcttttc 40470528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 42447015 - 42446943
Alignment:
Q  79 atgttcgaataatatcaacatcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcatt 151  Q
    |||||| |||||||| ||| |||||||||||||||||||||| | ||||| |||||||||| |||| ||||||    
T  42447015 atgttcaaataatataaacgtcatcaagtgacttgaatatcttccgctcgatgtaacatataatcacgtcatt 42446943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 3435449 - 3435401
Alignment:
Q  12 aacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttcc 60  Q
    ||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  3435449 aacccgtcaatagtgtgctaaataaagttaggaggtaaatgtcttttcc 3435401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 2826326 - 2826407
Alignment:
Q  21 atagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaa 105  Q
    |||| |||||||||||||||||    |||||| || | |||| ||||||||  |||||||||||||||||||||||||| |||||    
T  2826326 atagtgtgctaaataaaattaga---taaatgcccatgccgatacctctttgcggtgaatgttcgaataatatcaacattatcaa 2826407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 16788022 - 16788059
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  16788022 agagagatgaacccgtcaatagtgtgctaaataaaatt 16788059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 29728383 - 29728420
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  29728383 agagagatgaacccgtcaatagtgtgctaaataaaatt 29728420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 3648793 - 3648828
Alignment:
Q  5 agagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||| |||||||||||||||    
T  3648793 agagatgaacccgtcaatagtgtgctaaataaaatt 3648828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 21958375 - 21958333
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  21958375 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 21958333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 30791770 - 30791812
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| ||| ||||||||||||||||    
T  30791770 tcatagccaaactttgaacatcttcaaaagaagaaaaagaagc 30791812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 24592355 - 24592387
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaat 51  Q
    |||||| ||||||||||||||||||||||||||    
T  24592355 caatagtgtgctaaataaaattaggaggtaaat 24592387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 22483705 - 22483469
Alignment:
Q  20 aatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatc 119  Q
    |||||||||||| |||||||||||||||||||| |||||||||||  |||||  |||||||||||||||||||||||  ||||||||||| |||||||||    
T  22483705 aatagcgtgctagataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtgatttgaatatc 22483606  T
Q  120 tcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctcttt 219  Q
    ||| ||||||||||||||||||||||||||||| | ||  ||||||| || ||||||| ||||||| |||| ||||| || |||||||||||||||||||    
T  22483605 tcccgctcggtgtaacatatcatcaagtcatttaaccattcattgttaatcttgttgcgcaatttagtcttgataatcttcattgctgaaaaagctcttt 22483506  T
Q  220 aaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
     ||||||||||||||||||||||||||||| ||||||    
T  22483505 caacggatgttgtcgacaccggcaatatcaaagccaa 22483469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 34526508 - 34526272
Alignment:
Q  20 aatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatc 119  Q
    |||||||||||| |||||||||||||||||||| |||||||||||  |||||  |||||||||||||||||||||||  ||||||||||| |||||||||    
T  34526508 aatagcgtgctagataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtgatttgaatatc 34526409  T
Q  120 tcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctcttt 219  Q
    ||| |||||||||||||||||||||| |||||| | ||| ||||||| || ||||||| ||||||| |||| ||||| || |||||||||||||||||||    
T  34526408 tcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaatttagtcttgataatcttcattgctgaaaaagctcttt 34526309  T
Q  220 aaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
     |||||||| |||||||||||||||||||| ||||||    
T  34526308 caacggatgctgtcgacaccggcaatatcaaagccaa 34526272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 22464826 - 22464590
Alignment:
Q  20 aatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatc 119  Q
    |||||||||||| |||||||||||||||||||| ||||| |||||  |||||  |||||||||| ||||||||||||  ||||||||||| |||||||||    
T  22464826 aatagcgtgctagataaaattaggaggtaaatgcccttttcgagatttctttgcggtgaatgtttgaataatatcaatgtcatcaagtgatttgaatatc 22464727  T
Q  120 tcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctcttt 219  Q
    ||| |||||||||||||||||||||| |||||| | ||| ||||||| || ||||||| ||||||| |||| ||||| || |||||||||||||||||||    
T  22464726 tcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaatttagtcttgataatcttcattgctgaaaaagctcttt 22464627  T
Q  220 aaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
     |||||||| |||||||||||||||||||| ||||||    
T  22464626 caacggatgctgtcgacaccggcaatatcaaagccaa 22464590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 256
Target Start/End: Original strand, 33453214 - 33453443
Alignment:
Q  27 tgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgct 126  Q
    ||||||||||||||||||||||||||  ||||| || ||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  33453214 tgctaaataaaattaggaggtaaatgctctttctgatacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgacttaaatatctcccgct 33453313  T
Q  127 cggtgt-aacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctctttaaacgg 225  Q
    |||||| ||||||| || |||||| || | ||||||| |||||| ||||||| || ||||  ||| ||||| || |||| |||||||||||||| | |||    
T  33453314 cggtgtaaacatatgatgaagtca-ttgaccacacatcgttgatcttgttgcgcagtttagacttgataatcttcattgttgaaaaagctctttcagcgg 33453412  T
Q  226 atgttgtcgacaccggcaatatcatagccaa 256  Q
    ||| |||| ||||||||||||||| ||||||    
T  33453413 atgatgtcaacaccggcaatatcaaagccaa 33453443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 29 - 256
Target Start/End: Original strand, 35649688 - 35649913
Alignment:
Q  29 ctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgctcg 128  Q
    |||||||||||||||| ||||||||||||| ||||| ||||||   |||||||||  |||||||||||||||||||| |||||||||||||||| |||||    
T  35649688 ctaaataaaattaggaagtaaatgtccttttcgagatctctttgcagtgaatgtttcaataatatcaacatcatcaaatgacttgaatatctcccgctcg 35649787  T
Q  129 gtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctctttaaacggatg 228  Q
    |||||||||||||||||||||||  |  |||||| |||||| || | |  ||||||| |||| ||||| || ||||||||||||||||||| ||||||||    
T  35649788 gtgtaacatatcatcaagtcattgaacaacacatcgttgatcttctgg--caatttagtctttataatcttcattgctgaaaaagctctttcaacggatg 35649885  T
Q  229 ttgtcgacaccggcaatatcatagccaa 256  Q
     |||| ||||||  ||||||| ||||||    
T  35649886 ctgtcaacaccgaaaatatcaaagccaa 35649913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 12539732 - 12539574
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||| |||||||||||||||||||||||||||| |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  12539732 gtcaatagtgtgctaaataaaattaggaggtaaatgttctttccaagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 12539633  T
Q  117 atctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    ||||  |||||||| ||||||||||||||||||||  | ||| |||||||||| ||||||    
T  12539632 atcttatgctcggt-taacatatcatcaagtcattgaaccacgcattgttgatcttgttg 12539574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 19951842 - 19952017
Alignment:
Q  12 aacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgact 111  Q
    |||| |||||||| ||||||||| ||||||| ||||||||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  19951842 aacctgtcaatagtgtgctaaattaaattagaaggtaaatgcccttttcgagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgact 19951941  T
Q  112 tgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaat 187  Q
    ||||||||||  |||| |||| ||||||| ||||||||||  | || |||| ||| || ||||||| |||||||||    
T  19951942 tgaatatctctcgctcagtgtgacatatcgtcaagtcattgaaccatacatcgttaatcttgttgcgcaatttaat 19952017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 13308838 - 13308745
Alignment:
Q  54 cctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagt 147  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  13308838 cctttccgagacctctttatggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctctcgctcggtgtaacatatcatcaagt 13308745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 34317491 - 34317642
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||| ||||||| |||||||||||||||||||  ||||  |||||||||||  |||||      ||| |||||||||||||| |||||||||||||||    
T  34317491 caatagtgtgctaattaaaattaggaggtaaatgctctttttgagacctctttgcggtga------gaacaatatcaacatcatgaagtgacttgaatat 34317584  T
Q  119 ctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    ||| | |||||||||||||||||||||||||||  | |||||||  ||||| ||||||    
T  34317585 ctcttactcggtgtaacatatcatcaagtcattgaaccacacatcattgatcttgttg 34317642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 18425992 - 18426072
Alignment:
Q  32 aataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgactt 112  Q
    ||||||||||||||||||||  | |||  |||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  18425992 aataaaattaggaggtaaataacatttttgagacctctttacggtgaatgttcgaataatatcaacattatcaagtgactt 18426072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 45121405 - 45121337
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctcttt 71  Q
    ||||| ||||||| | |||||| || |||||||||||||||||||||||||| ||||||||||||||||    
T  45121405 agagacatgaacctgccaatagtgttctaaataaaattaggaggtaaatgtcttttccgagacctcttt 45121337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 26656360 - 26656452
Alignment:
Q  20 aatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaac-atcatcaagtgactt 112  Q
    ||||| |||| |||||||||||||||||||||| || |||  ||| ||||||  |||||||||||||||||||||||| ||| |||||||||||    
T  26656360 aatagtgtgcgaaataaaattaggaggtaaatgacc-ttctaagatctctttgcggtgaatgttcgaataatatcaacaatcgtcaagtgactt 26656452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 31392550 - 31392485
Alignment:
Q  26 gtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataat 91  Q
    |||||||||||||||| |||||||||| ||||| ||||||||||||  ||| ||||||||||||||    
T  31392550 gtgctaaataaaattaagaggtaaatgcccttttcgagacctctttgaggtaaatgttcgaataat 31392485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 34907723 - 34907624
Alignment:
Q  38 attaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgctcggtgtaacat 137  Q
    ||||||||||||||| ||||| ||| || ||| || | |||||||| |||| ||||||||| ||||||||||| ||| ||||||  | ||||||||||||    
T  34907723 attaggaggtaaatgcccttttcgaaacttctctccgatgaatgtttgaattatatcaacaccatcaagtgacctgagtatctctcgttcggtgtaacat 34907624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 7886675 - 7886758
Alignment:
Q  18 tcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatc 103  Q
    ||||||| |||||||||||||||||||||||| || |||||| || || |||||  |||||||||| |||||  ||||||||||||    
T  7886675 tcaatagtgtgctaaataaaattaggaggtaagtgacctttctgaaacttctttgcggtgaatgtttgaata--atcaacatcatc 7886758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 12756834 - 12756871
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  12756834 agagagatgaacccgtcaatagtgtgctaaataaaatt 12756871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 31581619 - 31581656
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  31581619 agagagatgaacccgtcaatagtgtgctaaataaaatt 31581656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 44084600 - 44084637
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  44084600 agagagatgaacccgtcaatagtgtgctaaataaaatt 44084637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 45418753 - 45418716
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  45418753 agagagatgaacccgtcaatagtgtgctaaataaaatt 45418716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 4555189 - 4555249
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgag 63  Q
    |||||||||||| ||||||||| ||| ||||||||||||  ||||||||||| ||| ||||    
T  4555189 agagagatgaactcgtcaatagtgtggtaaataaaattaaaaggtaaatgtctttttcgag 4555249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 7072528 - 7072577
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaattaggaggtaaatgt 53  Q
    |||||||||||||||||||| | || |||||||||||||||||||| ||||    
T  7072528 agagagatgaacccgtcaat-gtgtactaaataaaattaggaggtagatgt 7072577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 22483412 - 22483370
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  22483412 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 22483370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 34526215 - 34526173
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  34526215 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 34526173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 16405770 - 16405733
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  16405770 agagacatgaacccgtcaatagtgtgctaaataaaatt 16405733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 26238113 - 26238080
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataa 36  Q
    |||||||||||||||||||||| |||||||||||    
T  26238113 agagagatgaacccgtcaatagtgtgctaaataa 26238080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 32127138 - 32127175
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  32127138 agagacatgaacccgtcaatagtgtgctaaataaaatt 32127175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 35962885 - 35962848
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  35962885 agagacatgaacccgtcaatagtgtgctaaataaaatt 35962848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 214179 - 214416
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||||||||   || |||||||||||||||||||||||||||||||||| ||||||    
T  214179 caatagcgtgctaaataaaattaggaggtaaattccctttccgcgacctcttttgagttaatgttcgaataatatcaacatcatcaagtgactcgaatat 214278  T
Q  119 ctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctctt 218  Q
    |||||||||||||||||||||||||||||||||  | |||| ||||||||| |||||||  |||||| |||| ||||| || |||| |||||||||||||    
T  214279 ctcctgctcggtgtaacatatcatcaagtcattcaaccacatattgttgatcttgttgcgtaatttagtcttgataatcttcattggtgaaaaagctctt 214378  T
Q  219 taaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
    | |||||| ||||||||||| |||||||||| ||||||    
T  214379 tcaacggaagttgtcgacactggcaatatcaaagccaa 214416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 214473 - 214515
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  214473 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 214515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 15970 - 15734
Alignment:
Q  20 aatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatc 119  Q
    |||||||||||| |||||||||||||||||||| |||||||||||  |||||  |||||||||||||||||||||||  ||||||||||| |||||||||    
T  15970 aatagcgtgctagataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtgatttgaatatc 15871  T
Q  120 tcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctcttt 219  Q
    ||| |||||||||||||||||||||| |||||| | ||| ||||||| || ||||||| ||||||| |||| ||||| || |||||||||||||||||||    
T  15870 tcccgctcggtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcgcaatttagtcttgataatcttcattgctgaaaaagctcttt 15771  T
Q  220 aaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
     |||||||| |||||||||||||||||||| ||||||    
T  15770 caacggatgctgtcgacaccggcaatatcaaagccaa 15734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 15677 - 15635
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  15677 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 15635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 260077 - 259838
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||||||    
T  260077 gtcaatagcgtgctaaataaaattaggtggtaaatgccatttccgagacctctttgcggtgaatgttcgaataatatcaatgtcatcaagtgacttgaat 259978  T
Q  117 atctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctc 216  Q
    || ||| ||||| ||||||||||||||||||||||  | ||| |||||||||| ||||||| ||||||| |||| ||||| || |||||||||||| |||    
T  259977 atatcccgctcgatgtaacatatcatcaagtcattgaaccactcattgttgatcttgttgcgcaatttagtcttgataatcttcattgctgaaaaaactc 259878  T
Q  217 tttaaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
    ||| ||||||||  ||||||||||||||||||| ||||||    
T  259877 tttcaacggatgcagtcgacaccggcaatatcaaagccaa 259838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 259781 - 259739
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  259781 tcatagccaaactttgaacatcttcacaagaagaaaaagaagc 259739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 46 - 256
Target Start/End: Complemental strand, 27365013 - 27364803
Alignment:
Q  46 gtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaa 145  Q
    ||||||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27365013 gtaaatgcccttttcgagacctcttttcggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaa 27364914  T
Q  146 gtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctctttaaacggatgttgtcgacaccggcaat 245  Q
    ||||||| | |||||| ||||||| ||||||| ||||||| |||| ||||| || ||||||||||||||||||| |||||||||||||||||| | ||||    
T  27364913 gtcatttaaccacacactgttgatcttgttgcgcaatttagtcttgataatcttcattgctgaaaaagctctttcaacggatgttgtcgacactgacaat 27364814  T
Q  246 atcatagccaa 256  Q
    |||| ||||||    
T  27364813 atcaaagccaa 27364803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 25 - 256
Target Start/End: Original strand, 55464684 - 55464915
Alignment:
Q  25 cgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctg 124  Q
    |||||||||||||||||||||||| ||| | ||| ||   ||||||||  |||||||||||||||||||||||||||||||||||||||| | ||||| |    
T  55464684 cgtgctaaataaaattaggaggtagatgcctttttcgtagcctctttcgagtgaatgttcgaataatatcaacatcatcaagtgacttgattttctcccg 55464783  T
Q  125 ctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctctttaaacg 224  Q
    |||||||||||||||||||||||||||  | |||||||||||||| ||||||| ||||||| |||| ||||| || ||||||||||||||||||| ||||    
T  55464784 ctcggtgtaacatatcatcaagtcattcaaccacacattgttgatcttgttgcgcaatttagtcttgataatcttcattgctgaaaaagctctttcaacg 55464883  T
Q  225 gatgttgtcgacaccggcaatatcatagccaa 256  Q
    || ||||| ||||||| |||||||| ||||||    
T  55464884 gaagttgttgacaccgacaatatcaaagccaa 55464915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 31944775 - 31944616
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||| || |||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  31944775 gtcaatagtgtactaaataaaattaggaggtaaatgccctttccgagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 31944676  T
Q  117 atctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    |||||   |||||||||||||||||||||||||||  | ||||||| |||||| ||||||    
T  31944675 atctcacactcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 31944616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 12211244 - 12211406
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||    |||||||||||||||||||||||||||||| ||||||||||||    
T  12211244 caatagtgtgctaaataaaattaggaggtaaatgtcattttcgagacctcattgaaatgaatgttcgaataatatcaacatcatcaaatgacttgaatat 12211343  T
Q  119 ctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaa 181  Q
    |||||| ||||||||||||||||||||||||||  | ||||||| |||||| |||||||||||    
T  12211344 ctcctgttcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttgcacaa 12211406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 53693052 - 53693184
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||| ||||||||| |||||| ||||| |||| ||||||||||||||||||  | ||||||||||||||||||||||||||||||||| ||||| |||    
T  53693052 caatagtgtgctaaatgaaattaagaggtgaatgccctttccgagacctctttgcgatgaatgttcgaataatatcaacatcatcaagtgccttgattat 53693151  T
Q  119 ctcctgctcggtgtaacatatcatcaagtcatt 151  Q
    |||| ||||| ||||||||||||||||||||||    
T  53693152 ctcccgctcgatgtaacatatcatcaagtcatt 53693184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 42843867 - 42843687
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctc---tttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaa 115  Q
    ||||| |||||||||||||||||||| || |||| |||  ||||||||||   ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  42843867 caataacgtgctaaataaaattaggatgtcaatgccctccccgagacctcctctttgtggtgaatgttcgattaatatcaacatcatcaagtgacttgaa 42843768  T
Q  116 tatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataat 196  Q
    ||||||   |||  | |||||||||||||| |||||  | |||||||||||||| ||||||||||||||| |||| |||||    
T  42843767 tatctctcactcaatataacatatcatcaactcattaaaccacacattgttgatcttgttgcacaatttagtcttaataat 42843687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 4325575 - 4325412
Alignment:
Q  12 aacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgact 111  Q
    |||| |||||||| |||||||||||||||||||||||| || |||||| ||||| |  | ||| ||||||||| |||||||||||||||||||||||  |    
T  4325575 aacctgtcaatagtgtgctaaataaaattaggaggtaattgccctttctgagacattctgctg-tgaatgttcaaataatatcaacatcatcaagtgggt 4325477  T
Q  112 tgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    ||| |||||||  |||||||||||||||||||||||||||  | ||||||| |||||| ||||||    
T  4325476 tgattatctcccactcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 4325412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 3074526 - 3074417
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||| |||||||||||||||||||| |||||| |||| | |||||||||||  | ||||||||| ||||||||||||||||||||||||||||| |||    
T  3074526 caatagtgtgctaaataaaattaggagataaatgcccttcctgagacctctttgcgatgaatgttcaaataatatcaacatcatcaagtgacttgattat 3074427  T
Q  119 ctcctgctcg 128  Q
    |||| |||||    
T  3074426 ctcccgctcg 3074417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 8897952 - 8898037
Alignment:
Q  27 tgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgactt 112  Q
    |||||||||||||||||||||||||   ||||| |||||||||||  |||||||| ||||||||||||||||||||| ||||||||    
T  8897952 tgctaaataaaattaggaggtaaatagtctttctgagacctctttgcggtgaatgctcgaataatatcaacatcatccagtgactt 8898037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 48130148 - 48130088
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgag 63  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||    
T  48130148 agagagatgaacccgtcaatagtgtgctaaataaaattaggaggtaaatgttttttccgag 48130088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 10632662 - 10632757
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtg--aatgttcgaataatatcaacatcatcaagtgactt 112  Q
    |||||| |||| ||||||||||||||||||||||   |||||||||| |||||  ||||  ||||||||||||| || ||||||||||||||||||    
T  10632662 caatagtgtgcaaaataaaattaggaggtaaatgatatttccgagacttctttgcggtgaaaatgttcgaataacattaacatcatcaagtgactt 10632757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 30110145 - 30110085
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgag 63  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||  ||||||||    
T  30110145 agagagatgaacccgtcaatagtgtgctaaataaaattaggtggtaaatgtattttccgag 30110085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 3240302 - 3240385
Alignment:
Q  29 ctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgactt 112  Q
    |||||||||||||||||| ||||  | ||| ||||| ||||||  ||||||| |||||||| ||||||||||||||||| ||||    
T  3240302 ctaaataaaattaggaggcaaataacattttcgagatctctttgcggtgaatattcgaatattatcaacatcatcaagtaactt 3240385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 25182896 - 25182952
Alignment:
Q  18 tcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctg 74  Q
    ||||||| ||||||||||||||||| ||||||||  ||||| |||||||||||||||    
T  25182896 tcaatagtgtgctaaataaaattagaaggtaaatacccttttcgagacctctttctg 25182952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 6235690 - 6235653
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  6235690 agagagatgaacccgtcaatagtgtgctaaataaaatt 6235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 25930878 - 25930841
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  25930878 agagagatgaacccgtcaatagtgtgctaaataaaatt 25930841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 30216739 - 30216776
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  30216739 agagagatgaacccgtcaatagtgtgctaaataaaatt 30216776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 36382343 - 36382380
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  36382343 agagagatgaacccgtcaatagtgtgctaaataaaatt 36382380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 44156821 - 44156784
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  44156821 agagagatgaacccgtcaatagtgtgctaaataaaatt 44156784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 48989498 - 48989461
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  48989498 agagagatgaacccgtcaatagtgtgctaaataaaatt 48989461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 1147658 - 1147584
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataat 91  Q
    |||||||| ||  |||| |||||||||||||||||   |||||||||||||||||    ||||||||||||||||    
T  1147658 gtcaatagtgttttaaagaaaattaggaggtaaatactctttccgagacctctttgcaatgaatgttcgaataat 1147584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 27364746 - 27364704
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  27364746 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 27364704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 55464972 - 55465014
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  55464972 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 55465014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 3292893 - 3292930
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  3292893 agagagatgaactcgtcaatagtgtgctaaataaaatt 3292930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 6690232 - 6690269
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  6690232 agagagacgaacccgtcaatagtgtgctaaataaaatt 6690269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 28877247 - 28877284
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  28877247 agagagatgaacccatcaatagtgtgctaaataaaatt 28877284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 29319702 - 29319739
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  29319702 agagacatgaacccgtcaatagtgtgctaaataaaatt 29319739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 35546123 - 35546086
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  35546123 agagagatgaacccatcaatagtgtgctaaataaaatt 35546086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 40529185 - 40529148
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  40529185 agagatatgaacccgtcaatagtgtgctaaataaaatt 40529148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 50205074 - 50205111
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  50205074 agagtgatgaacccgtcaatagtgtgctaaataaaatt 50205111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 21973807 - 21974043
Alignment:
Q  20 aatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatc 119  Q
    |||||| ||||| |||||||||||||||||||| |||||||||||  |||||  |||||||||||||||||||||||  ||||||||||| |||||||||    
T  21973807 aatagcatgctagataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtgatttgaatatc 21973906  T
Q  120 tcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctcttt 219  Q
    ||| |||| ||||||||||||||||| |||||| | ||| ||||||| || ||||||||||||||| |||| ||||| || |||||||||||||||||||    
T  21973907 tcccgctcagtgtaacatatcatcaaatcatttaaccactcattgttaatcttgttgcacaatttagtcttgataatcttcattgctgaaaaagctcttt 21974006  T
Q  220 aaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
     |||||||| |||||||||||||||||||| ||||||    
T  21974007 caacggatgctgtcgacaccggcaatatcaaagccaa 21974043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 63 - 256
Target Start/End: Complemental strand, 17127552 - 17127359
Alignment:
Q  63 gacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacat 162  Q
    ||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||  | |||||||    
T  17127552 gacctctttcgagtgaatgttcgaataatatcaacatcatcaagcgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccacacat 17127453  T
Q  163 tgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctctttaaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
    ||||||| ||||||| ||||||| |||| ||||| || |||| |||||||||||||| |||||| ||||||||||| |||||||||| ||||||    
T  17127452 tgttgatcttgttgcgcaatttagtcttgataatcttcattgttgaaaaagctctttcaacggaagttgtcgacactggcaatatcaaagccaa 17127359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 35948998 - 35949131
Alignment:
Q  21 atagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatct 120  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||    
T  35948998 atagcgtgcaaaataaaattaggaggtaaatgtcctttccgagacctcttttcggtgaatgttcgaataacatcaacatcatcaagtgacttgaatatct 35949097  T
Q  121 cctgctcggtgtaacatatcatcaagtcatttta 154  Q
    || |||||||||||||||||||||||||||||||    
T  35949098 cccgctcggtgtaacatatcatcaagtcatttta 35949131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 9637279 - 9637146
Alignment:
Q  18 tcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaata 117  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  9637279 tcaatagtgtgctaaataaaattaggatgtaaatgccctttccgagacctctttgcggtgaatgttcaaataatatcaacatcatcaagtgacttgaata 9637180  T
Q  118 tctcctgctcggtgtaacatatcatcaagtcatt 151  Q
    || || ||||||||||||||||||||||||||||    
T  9637179 tcacccgctcggtgtaacatatcatcaagtcatt 9637146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 25017550 - 25017386
Alignment:
Q  12 aacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgact 111  Q
    |||| |||||||| ||||||||||||||||||||||| ||| |||||| |||||||||||  |||||| ||||||||||||||||||||||||||||| |    
T  25017550 aacctgtcaatagtgtgctaaataaaattaggaggtatatgccctttctgagacctctttgcggtgaacgttcgaataatatcaacatcatcaagtgatt 25017451  T
Q  112 tgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    ||||||||||  ||||||||||| ||||||||||||||||  | ||||||| |||||| ||||||    
T  25017450 tgaatatctctcgctcggtgtaagatatcatcaagtcattgaaccacacatcgttgatcttgttg 25017386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 26272947 - 26273114
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||| ||||||||||||||||| |||||| || |||||||||||||| |||  | |||||||||||||||||| |||||||||| |||||||||||||    
T  26272947 caatagtgtgctaaataaaattagtaggtaattgccctttccgagacctgtttgcgatgaatgttcgaataatattaacatcatcacgtgacttgaatat 26273046  T
Q  119 ctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaa 186  Q
    |||||||||| |||||||||||||||| |||||  |  |||||| |||||||||||||| ||||||||    
T  26273047 ctcctgctcgatgtaacatatcatcaaatcattgaacaacacatcgttgattttgttgcgcaatttaa 26273114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 48606630 - 48606787
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||| |||||||||||||||| |||||||||| ||||||  ||||||||||  ||||| |||| ||||||||||||||| ||||||| ||||||||||    
T  48606630 caatagtgtgctaaataaaattatgaggtaaatgccctttcgaagacctctttgcggtgagtgtttgaataatatcaacattatcaagttacttgaatat 48606729  T
Q  119 ctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    |||| ||||||||||||||||||||||||||||  | ||||||| |||||| ||||||    
T  48606730 ctcccgctcggtgtaacatatcatcaagtcattgaaccacacatcgttgatcttgttg 48606787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 14499056 - 14498922
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||| ||  |||||| ||||||||||||||||||||||| |||||||||||  | |||||||||||||||||||||||||||||| ||||||||||    
T  14499056 gtcaatagtgttttaaatataattaggaggtaaatgtcctttctgagacctctttgcgatgaatgttcgaataatatcaacatcatcaaatgacttgaat 14498957  T
Q  117 atctcctgctcggtgtaacatatcatcaagtcatt 151  Q
    |||||| ||||| ||||| ||||||||||||||||    
T  14498956 atctcccgctcgatgtaagatatcatcaagtcatt 14498922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 52753836 - 52753985
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||| |||||| |||||||||||||||||||  ||||||||||||||||||   | ||||||||||||||||||||||||||||| ||||||||||    
T  52753836 gtcaatagtgtgctagataaaattaggaggtaaataccctttccgagacctcttt---gcgaatgttcgaataatatcaacatcatcaaatgacttgaat 52753932  T
Q  117 atctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgat 169  Q
    |||||| | ||| ||||||||||||||||||||||  | ||||||| ||||||    
T  52753933 atctcccgttcgatgtaacatatcatcaagtcattgaaccacacatcgttgat 52753985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 30559023 - 30559180
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatat 118  Q
    |||||| |||||||||||||||||||||||||| || |||  |||| || |||  |||||||||||||||||||||| ||||||||||||||||||||||    
T  30559023 caatagtgtgctaaataaaattaggaggtaaatatcatttatgagatctatttacggtgaatgttcgaataatatcagcatcatcaagtgacttgaatat 30559122  T
Q  119 ctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    |||  |||||||||||||||||||||||||||   | ||||||| |||||| ||||||    
T  30559123 ctctcgctcggtgtaacatatcatcaagtcatagaaccacacatcgttgatcttgttg 30559180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 40864738 - 40864894
Alignment:
Q  20 aatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatc 119  Q
    ||||| ||||||||||||||||||||||||||| ||||||  | ||||||||  |||||||||||||||||||||||||| |||||||||||||||||||    
T  40864738 aatagtgtgctaaataaaattaggaggtaaatgccctttctaaaacctctttgcggtgaatgttcgaataatatcaacattatcaagtgacttgaatatc 40864837  T
Q  120 tcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
     |  | ||||||||| ||||||||||||||||  | ||||||| |||||| ||||||    
T  40864838 cctcgttcggtgtaagatatcatcaagtcattgaaccacacatcgttgatcttgttg 40864894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 176
Target Start/End: Original strand, 32379867 - 32380027
Alignment:
Q  12 aacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgact 111  Q
    |||| |||||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||  | | |||||||||||||||||||||||||||||||| |    
T  32379867 aacctgtcaatagtgtgctaaataaaattaggaggtaaatgtcattttcgatacctctttgcg-taaatgttcgaataatatcaacatcatcaagtgaat 32379965  T
Q  112 tgaatatctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    ||||||||||| | | ||||||||||   |||||||||||  | ||||||| |||||| ||||||    
T  32379966 tgaatatctcccgtttggtgtaacat---atcaagtcattgaaccacacatcgttgatcttgttg 32380027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 30054980 - 30054847
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||  ||||||||||||||||||||||||||||| |||  || ||||||||  || ||| ||||||||||| |||| || ||||||||||||||||    
T  30054980 gtcaataatgtgctaaataaaattaggaggtaaatgtcatttatgatacctctttgcggagaaggttcgaataatgtcaatatgatcaagtgacttgaat 30054881  T
Q  117 atctcctgctcggtgtaacatatcatcaagtcat 150  Q
    |||||| ||||||||||||||||||| |||||||    
T  30054880 atctcccgctcggtgtaacatatcattaagtcat 30054847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 17874937 - 17874845
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtga 109  Q
    |||||||| ||| ||||||||||||| |||||||||  |||| ||||||||||||  |||||||||| ||||||||||||||||||| |||||    
T  17874937 gtcaatagtgtggtaaataaaattagaaggtaaatgatcttttcgagacctctttgcggtgaatgtttgaataatatcaacatcatccagtga 17874845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 33489876 - 33489819
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttcc 60  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  33489876 agagagatgaacccgtcaatagtgtgctaaataaaattaggaggtaaatgtcttttcc 33489819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 41972253 - 41972310
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttcc 60  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  41972253 agagagatgaacccgtcaatagtgtgctaaataaaattaggaggtaaatgtcttttcc 41972310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 28463268 - 28463200
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctcttt 71  Q
    ||||||||||||||  |||||| |||||||||||||||||||||| |||| ||||||| ||||||||||    
T  28463268 agagagatgaacccaccaatagtgtgctaaataaaattaggaggtgaatgccctttccaagacctcttt 28463200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 11843917 - 11843965
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacct 67  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||    
T  11843917 caatagtgtgctaaataaaattaggaggtaaatgtcctttcagagacct 11843965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 3829153 - 3829116
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3829153 agagagatgaacccgtcaatagtgtgctaaataaaatt 3829116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 42310938 - 42310975
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  42310938 agagagatgaacccgtcaatagcgtactaaataaaatt 42310975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 17127302 - 17127260
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  17127302 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 17127260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 21974100 - 21974142
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  21974100 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 21974142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 7433615 - 7433578
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  7433615 agagacatgaacccgtcaatagtgtgctaaataaaatt 7433578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 197261 - 197025
Alignment:
Q  20 aatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatc 119  Q
    |||||||||||| |||||||||||||||||||| ||||| |||||  |||||  |||||||||| ||||||||||||  ||||||||||| |||||||||    
T  197261 aatagcgtgctagataaaattaggaggtaaatgcccttttcgagatttctttgcggtgaatgtttgaataatatcaatgtcatcaagtgatttgaatatc 197162  T
Q  120 tcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttgcacaatttaatcttcataatttttattgctgaaaaagctcttt 219  Q
    ||| |||||||||||||||||||||| |||||| | ||| ||||||| || ||||||| ||||||| |||| ||||| || |||||||||||||||||||    
T  197161 tcccgctcggtgtaacatatcatcaattcatttaaccactcattgttaatcttgttgcgcaatttagtcttgataatcttcattgctgaaaaagctcttt 197062  T
Q  220 aaacggatgttgtcgacaccggcaatatcatagccaa 256  Q
     |||||||| |||||||||||||||||||| ||||||    
T  197061 caacggatgctgtcgacaccggcaatatcaaagccaa 197025  T

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Target: scaffold0012; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 196968 - 196926
Alignment:
Q  247 tcatagccaaactttgaacatc-tcacaagaagaaaaagaagc 288  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  196968 tcatagccaaactttgaacatcttcacaagaagaaaaggaagc 196926  T

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Target: scaffold0178 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 17899 - 17740
Alignment:
Q  17 gtcaatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||||| |||||||||||||||||||| ||||||||||||| |||||||||||  |||||||||||||||||||||||||||| |||||||||| |||    
T  17899 gtcaatagtgtgctaaataaaattaggagttaaatgtcctttcggagacctctttgcggtgaatgttcgaataatatcaacatcagcaagtgacttaaat 17800  T
Q  117 atctcctgctcggtgtaacatatcatcaagtcattttatcacacattgttgattttgttg 176  Q
    |||||| ||||| |||||| |||||||||||||||  | ||||||| |||||| ||||||    
T  17799 atctcccgctcgatgtaacgtatcatcaagtcattgaaccacacatcgttgatcttgttg 17740  T

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Target: scaffold0198 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 1545 - 1430
Alignment:
Q  27 tgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcctgct 126  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||    |||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  1545 tgctaaataaaattaggaggcaaatgccatttccgagacctctttgcaatgaatgttcgaataatatcaacatcatcaagtgatttgaatatctcccgct 1446  T
Q  127 cggtgtaacatatcat 142  Q
    ||||||||||||||||    
T  1445 cggtgtaacatatcat 1430  T

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Target: scaffold0002 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 435366 - 435491
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtga--atgttcgaataatatcaacatcatcaagtgacttgaat 116  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||   ||| |  |||||| |||||||||||||| ||||||||||||||||    
T  435366 caatagtgtgctaaataaaattaggaggtaaatgtccttttcgagacctcttcgcggttaatatgttctaataatatcaacataatcaagtgacttgaat 435465  T
Q  117 atctcctgctcggtgtaacatatcat 142  Q
    |||| | |||||||||||||||||||    
T  435466 atcttccgctcggtgtaacatatcat 435491  T

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Target: scaffold0726 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 1040 - 954
Alignment:
Q  19 caatagcgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataatatcaacatcatcaa 105  Q
    |||||| |||||||||||||||||||| |||||| |||||| |||||||||||  ||||||||||||||||||||||||||||||||    
T  1040 caatagtgtgctaaataaaattaggagataaatgccctttcggagacctctttgcggtgaatgttcgaataatatcaacatcatcaa 954  T

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Target: scaffold0170 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 9223 - 9161
Alignment:
Q  29 ctaaataaaattaggaggtaaatgtcctttccgagacctctttctggtgaatgttcgaataat 91  Q
    |||||||||||||||||||||||||||||||   ||||||||||  |||||||||||||||||    
T  9223 ctaaataaaattaggaggtaaatgtcctttctacgacctctttcgagtgaatgttcgaataat 9161  T

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Target: scaffold0502 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 5400 - 5363
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  5400 agagagatgaacccgtcaatagtgtgctaaataaaatt 5363  T

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Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 53095 - 53058
Alignment:
Q  3 agagagatgaacccgtcaatagcgtgctaaataaaatt 40  Q
    |||||||||||||||||||||| |||||||||||||||    
T  53095 agagagatgaacccgtcaatagtgtgctaaataaaatt 53058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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