View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11396_low_34 (Length: 285)

Name: NF11396_low_34
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11396_low_34
NF11396_low_34
[»] chr2 (1 HSPs)
chr2 (15-190)||(36436566-36436740)
[»] chr4 (3 HSPs)
chr4 (23-66)||(34968348-34968390)
chr4 (22-71)||(2228408-2228456)
chr4 (25-69)||(50650549-50650592)
[»] chr6 (1 HSPs)
chr6 (25-77)||(24438297-24438348)
[»] chr3 (1 HSPs)
chr3 (30-72)||(41151462-41151503)
[»] chr1 (1 HSPs)
chr1 (45-79)||(23776629-23776663)
[»] chr8 (1 HSPs)
chr8 (16-77)||(7404772-7404833)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 36436566 - 36436740
Alignment:
Q  15 tgaacatcagactttacatatattatgcatttatttttaccaactgagttaaattcaagaggacatgtgaaacatgatataatataatattaaatgatgt 114  Q
    ||||| |||||  ||||||||||||| ||||| || |||||||||||  |||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  36436566 tgaacctcagatcttacatatattatacattt-ttcttaccaactgaactaaacttaagaggacatgtgaaacatgatataatataatattaaatgatgt 36436664  T
Q  115 ctaatttgagcataacaatatggaaaaagaggtgtattatttgaacacaatttgtaagacagcttatggtacaacc 190  Q
    |||||||||||||| ||||||  |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  36436665 ctaatttgagcatagcaatataaaaaaagagttgtattatttgaacacaatttgtaagacaacttatggtataacc 36436740  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 34968390 - 34968348
Alignment:
Q  23 agactttacatatattatgcatttatttttaccaactgagttaa 66  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  34968390 agactttacatatattatgca-ttatttttaccaactgagttaa 34968348  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 2228408 - 2228456
Alignment:
Q  22 cagactttacatatattatgcatttatttttaccaactgagttaaattca 71  Q
    ||||| |||||||||||||||| ||||| |||| ||||||||||||||||    
T  2228408 cagaccttacatatattatgca-ttattcttactaactgagttaaattca 2228456  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 50650592 - 50650549
Alignment:
Q  25 actttacatatattatgcatttatttttaccaactgagttaaatt 69  Q
    ||||||||| ||||||||||| ||||||||||||||| |||||||    
T  50650592 actttacatttattatgcatt-atttttaccaactgaattaaatt 50650549  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 24438297 - 24438348
Alignment:
Q  25 actttacatatattatgcatttatttttaccaactgagttaaattcaagagga 77  Q
    ||||||||||||||||||| ||||| |||||||||||||||| |||| |||||    
T  24438297 actttacatatattatgca-ttattcttaccaactgagttaagttcacgagga 24438348  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 41151503 - 41151462
Alignment:
Q  30 acatatattatgcatttatttttaccaactgagttaaattcaa 72  Q
    |||||||||||| ||| ||||||||||||||||||||||||||    
T  41151503 acatatattatgtatt-atttttaccaactgagttaaattcaa 41151462  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 23776663 - 23776629
Alignment:
Q  45 ttatttttaccaactgagttaaattcaagaggaca 79  Q
    ||||||||||||||||||||||||||| |||||||    
T  23776663 ttatttttaccaactgagttaaattcatgaggaca 23776629  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 7404833 - 7404772
Alignment:
Q  16 gaacatcagactttacatatattatgcatttatttttaccaactgagttaaattcaagagga 77  Q
    |||| |||||| ||| ||||||||||||||| | | |||||||||||||||| ||| |||||    
T  7404833 gaacctcagaccttatatatattatgcatttgtctctaccaactgagttaaactcacgagga 7404772  T

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