View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_low_36 (Length: 276)
Name: NF11396_low_36
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 42609699 - 42609952
Alignment:
| Q |
7 |
gcacgttggacatgagtggtgacaggactagcaaggtattgaagttctgaacaataggatgccattgcaacttctgctcctttgaagccgtaatccaaac |
106 |
Q |
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| T |
42609699 |
gcactttggacatgagtggtgacaggactagcaaggtattgaagttctgaacaataggatgccattgcaacttctgctcctttgaagccgtaatccaaac |
42609798 |
T |
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| Q |
107 |
ttggattgcggctagcagtgagacttgaaggcaatccgttgttatagatgtcattcacaagctcagtgaattgagcaaacataagtttaccaatggcagc |
206 |
Q |
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| T |
42609799 |
ttggattgcggctagcagtgagacttgaaggcaatccgttgttatagatgtcattcacaagctcagtgaattgagcaaacataagtttaccaatggcagc |
42609898 |
T |
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| Q |
207 |
aatggctaaacgagtgttatccatcgatacaccaatcggtgtaccttggaaatt |
260 |
Q |
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| T |
42609899 |
aatggctaaacgagtgttatccatcgatacaccaatcggtgtaccttggaaatt |
42609952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 28184313 - 28184536
Alignment:
| Q |
7 |
gcacgttggacatgagtggtgacaggactagcaaggtattgaagttctgaacaataggatgccattgcaacttctgctcctttgaagccgtaatccaaac |
106 |
Q |
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| T |
28184313 |
gcactttgcacatgggtggtgacagggttagcaagatattgtaactcggagcaataagaagccatagcaatttcagatcccttgaaaccataatccaaac |
28184412 |
T |
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| Q |
107 |
ttggattgcggctagcagtgagacttgaaggcaatccgttgttatagatgtcattcacaagctcagtgaattgagcaaacataagtttaccaatggcagc |
206 |
Q |
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| T |
28184413 |
ttgggtttctacttgcagtaagattcgaaggcaaaccattgttgtaaaaatcattaacaagctcagagaattgagcaaacatgagtttaccgatcgaagc |
28184512 |
T |
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| Q |
207 |
aatggctaaacgagtgttatccat |
230 |
Q |
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| T |
28184513 |
aagagctaaacgagtgttgtccat |
28184536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 40945058 - 40944913
Alignment:
| Q |
55 |
gaacaataggatgccattgcaacttctgctcctttgaagccgtaatccaaacttggattgcggctagcagtgagacttgaaggcaatccgttgttataga |
154 |
Q |
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| T |
40945058 |
gaacaataggaagccatggcaatttcagctcccttgaaaccataatccaaactaggatttctactcgcagaaagatttgaaggcaatccattgttgtaaa |
40944959 |
T |
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| Q |
155 |
tgtcattcacaagctcagtgaattgagcaaacataagtttaccaat |
200 |
Q |
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| T |
40944958 |
aatcattgacaagctcagagaattgagcaaacataagtttgccaat |
40944913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 200
Target Start/End: Complemental strand, 40959023 - 40958878
Alignment:
| Q |
55 |
gaacaataggatgccattgcaacttctgctcctttgaagccgtaatccaaacttggattgcggctagcagtgagacttgaaggcaatccgttgttataga |
154 |
Q |
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||||||||||| ||||| |||| ||| ||||| ||||| || ||||||||||| ||||| | || |||| ||| ||||||||||||| ||||| || | |
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| T |
40959023 |
gaacaataggaagccatggcaatttcagctcccttgaaaccataatccaaactaggatttctacttgcagaaagatttgaaggcaatccattgttgtaaa |
40958924 |
T |
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| Q |
155 |
tgtcattcacaagctcagtgaattgagcaaacataagtttaccaat |
200 |
Q |
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| T |
40958923 |
aatcattgacaagctcagagaattgagcaaacataagtttgccaat |
40958878 |
T |
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