View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11396_low_37 (Length: 270)
Name: NF11396_low_37
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_low_37 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 2759105 - 2758860
Alignment:
| Q |
19 |
atacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2759105 |
atacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggctt |
2759006 |
T |
|
| Q |
119 |
gtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2759005 |
gtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaacgatgcttctc |
2758906 |
T |
|
| Q |
219 |
tcatatgcttcacccatgttcttattccttcattggtctctgcttc |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2758905 |
tcatatgcttcacccatgttcttattccttcattggtttctgcttc |
2758860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 2856057 - 2856302
Alignment:
| Q |
19 |
atacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggctt |
118 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| || ||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
2856057 |
atacctctggcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaattttatgatggggaatcaaagttttgattcggctt |
2856156 |
T |
|
| Q |
119 |
gtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctc |
218 |
Q |
| |
|
|||| |||||||| || |||||| | ||| ||||||||||| |||| |||| |||||||||||| ||||| | |||||||||||||||||||||||||| |
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|
| T |
2856157 |
gtaaccttgttgactaaagatccacgtccatgaggattggccctatgtatcaaccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctc |
2856256 |
T |
|
| Q |
219 |
tcatatgcttcacccatgttcttattccttcattggtctctgcttc |
264 |
Q |
| |
|
||| ||||||||||| ||||||||||| |||||| | |||||||| |
|
|
| T |
2856257 |
tcagctgcttcacccaagttcttattccatcattgatgtctgcttc |
2856302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 2838850 - 2839092
Alignment:
| Q |
19 |
atacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggctt |
118 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2838850 |
atacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattaacctt |
2838949 |
T |
|
| Q |
119 |
gtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctc |
218 |
Q |
| |
|
| | || || ||| ||||| || ||||||||||||||| |||| || || ||||||||||| ||||| | |||||||||||||||||||||||||| |
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|
| T |
2838950 |
ggagtc---atgcataaagatctgcatccaggaggattggccctatgcattagtcgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctc |
2839046 |
T |
|
| Q |
219 |
tcatatgcttcacccatgttcttattccttcattggtctctgcttc |
264 |
Q |
| |
|
||| ||||||||||| ||||||||||| || ||| | |||||||| |
|
|
| T |
2839047 |
tcagctgcttcacccaagttcttattccatcgttgatgtctgcttc |
2839092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 2768960 - 2768715
Alignment:
| Q |
19 |
atacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggctt |
118 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| || ||| ||||| ||||||||| |||||||||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
2768960 |
atacctctcgcttctttccttgattccacgaattgacaacttaatgtcctgaatctctaatgcaattttatgacggggagtcaaagttttgattaggctt |
2768861 |
T |
|
| Q |
119 |
gtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctc |
218 |
Q |
| |
|
| ||||||| || || |||||||| | ||| |||||||| ||||| ||| |||||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
2768860 |
gcaatcttgaagattaaagatccgcgtctgggacgattggccctatgggtcaaccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctc |
2768761 |
T |
|
| Q |
219 |
tcatatgcttcacccatgttcttattccttcattggtctctgcttc |
264 |
Q |
| |
|
||| ||||||||||| ||||||||||| || ||||| |||||||| |
|
|
| T |
2768760 |
tcagctgcttcacccaagttcttattccatcgttggtgtctgcttc |
2768715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 5412798 - 5412563
Alignment:
| Q |
19 |
atacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggctt |
118 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||| || ||| ||||| |||||||| ||||| || | ||| ||||||||||||||||||| |||| |
|
|
| T |
5412798 |
atacctctcacttctttccttgattccacgaattgacaacttaatgtcctgaatctcagatgctatctgatgatggggaatcaaagttttgatcaagctt |
5412699 |
T |
|
| Q |
119 |
gtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctc |
218 |
Q |
| |
|
| ||||||| || || ||||| || ||| |||||||| || |||| || |||||| ||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
5412698 |
gcaatcttgcagactaaagatctgcatccaagaggattgaccctatgcattagccgatggtattcgtcaatgacatcttcaatgcgaaatgatgcttctc |
5412599 |
T |
|
| Q |
219 |
tcatatgcttcacccatgttcttattccttcattgg |
254 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5412598 |
tcatatgcttcacccatgttcttattccatcattgg |
5412563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 2748889 - 2748644
Alignment:
| Q |
19 |
atacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggctt |
118 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||| | || ||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |
|
|
| T |
2748889 |
atacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagttttgatttgcctt |
2748790 |
T |
|
| Q |
119 |
gtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctc |
218 |
Q |
| |
|
| ||||||| || || |||||||| | ||||||||||||| |||| || |||||||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
2748789 |
gcaatcttgccgactaaagatccgcatctaggaggattggccctatgcattagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctc |
2748690 |
T |
|
| Q |
219 |
tcatatgcttcacccatgttcttattccttcattggtctctgcttc |
264 |
Q |
| |
|
||| ||||||||||| ||||||||||| || || || |||||||| |
|
|
| T |
2748689 |
tcagctgcttcacccaagttcttattccatcgttagtgtctgcttc |
2748644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 2797252 - 2797016
Alignment:
| Q |
19 |
atacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggctt |
118 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||| | ||| |||| | |||||| ||||| || | |||| ||| |||||| ||||||||| | ||| |
|
|
| T |
2797252 |
atacctctcacttctttccttgattccacgaattgatatcttaatgttcttaatctcagatgctatctggtgaagggaaatcaatgttttgattagactt |
2797153 |
T |
|
| Q |
119 |
gtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctc |
218 |
Q |
| |
|
| ||||||| || || |||||||| || ||||||| |||| |||| |||||| |||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
2797152 |
gcaatcttgcagactaaagatccgcatcccggaggataggccctatgcatcagctgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctc |
2797053 |
T |
|
| Q |
219 |
tcatatgcttcacccatgttcttattccttcattggt |
255 |
Q |
| |
|
||| |||||||||||| ||||||||||| |||||||| |
|
|
| T |
2797052 |
tcagatgcttcacccaagttcttattccatcattggt |
2797016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 2818448 - 2818213
Alignment:
| Q |
19 |
atacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggctt |
118 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| || ||||||||| ||||||||||||||||||| | ||||||| ||||||| || ||| ||| |
|
|
| T |
2818448 |
atacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaatttcataacggggagtcaaagtcttcattaatctt |
2818349 |
T |
|
| Q |
119 |
gtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctc |
218 |
Q |
| |
|
| ||||||| | | ||||| || || |||| ||||| | ||||||||| |||||||||| ||||| | ||||||||||||||||||||| |||| |
|
|
| T |
2818348 |
ggaatcttgcataccaaagatctgcatcctggagaattggtcctatggatcaaaagaaggtattcatcaatgacatcttcaatgcgaaatgatgcatctc |
2818249 |
T |
|
| Q |
219 |
tcatatgcttcacccatgttcttattccttcattgg |
254 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
2818248 |
tcacttgcttcacccatgttcttattccatcattgg |
2818213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 2790258 - 2790004
Alignment:
| Q |
19 |
atacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggctt |
118 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||| | ||| |||| || |||||| ||||| || | ||| |||||||||||||||||||| ||||| |
|
|
| T |
2790258 |
atacctctcacttctttccttgattccacgaattgatatcttaatgtttttaatctcagatgctatctgatgatggggaatcaaagttttgattaggctt |
2790159 |
T |
|
| Q |
119 |
gtaatcttgttgaatacagat---ccgctaccaggaggattgg------ccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatg |
209 |
Q |
| |
|
| ||||||| ||||| |||| | || |||| |||||||| || |||| || |||||||||||||| || || ||||||||||||||||||| |
|
|
| T |
2790158 |
gcaatcttgcagaataaagattgacggcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgatatcttcaatgcgaaatg |
2790059 |
T |
|
| Q |
210 |
atgcttctctcatatgcttcacccatgttcttattccttcattggtctctgcttc |
264 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
2790058 |
atgcttctctcagctgcttcacccaagttcttattccatcattggtgtctgcttc |
2790004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 2755782 - 2755699
Alignment:
| Q |
172 |
ccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttcattggt |
255 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
2755782 |
ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcatatgcttcacccaagttcttattccatcattggt |
2755699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 2807161 - 2806907
Alignment:
| Q |
19 |
atacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggctt |
118 |
Q |
| |
|
||||||| | |||||||||||||||||| ||| | || ||| |||||| | |||| ||||| || | |||||||||||||||||||||| ||||| |
|
|
| T |
2807161 |
atacctctcacttctttccttgattccgcgaaccgacaccttaatgtctcggatcttagatgctatatgatgacggggaatcaaagttttgaccaggctt |
2807062 |
T |
|
| Q |
119 |
gtaatcttgttgaatacagatcc---gctaccaggaggattgg------ccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatg |
209 |
Q |
| |
|
| |||||||| |||| |||||| || ||||||||| ||| || |||| ||||||||| ||||||| || || ||||||||||||||||||| |
|
|
| T |
2807061 |
gcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatatcttcaatgcgaaatg |
2806962 |
T |
|
| Q |
210 |
atgcttctctcatatgcttcacccatgttcttattccttcattggtctctgcttc |
264 |
Q |
| |
|
||||||| | || ||||| ||||| ||||| ||||| ||||| || |||||||| |
|
|
| T |
2806961 |
atgcttcgcgcagctgctttacccaagttctaattccatcatttgtgtctgcttc |
2806907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 3304343 - 3304416
Alignment:
| Q |
182 |
tcgtcaattatatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttattccttcattggt |
255 |
Q |
| |
|
||||| |||| |||||| |||||||| ||| ||||||| | ||||||||||||||| | | |||||||||||| |
|
|
| T |
3304343 |
tcgtcgattacatcttctatgcgaaaagatacttctcttacttgcttcacccatgttttgactccttcattggt |
3304416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 29 - 264
Target Start/End: Original strand, 6409 - 6644
Alignment:
| Q |
29 |
cttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagttttgattgggcttgtaatcttgt |
128 |
Q |
| |
|
||||| ||||||||||| |||||| |||||| ||||| |||||||| ||||| || | || | | |||||||||||||||| ||||| ||||||| |
|
|
| T |
6409 |
cttctgtccttgattccacgaattgacagctttatgtcctgaatctcagatgctatctgatgctgagaaatcaaagttttgattaggcttacaatcttgc |
6508 |
T |
|
| Q |
129 |
tgaatacagatccgctaccaggaggattggccgtatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaatgatgcttctctcatatgctt |
228 |
Q |
| |
|
|| || ||||||| |||||||| |||||| |||||||||||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6509 |
agactaatgatccgcatccaggagggttggccctatggatcagccgaaggtattcatcaataacatcttcaatgcgaaatgatgcttccctcatatgctt |
6608 |
T |
|
| Q |
229 |
cacccatgttcttattccttcattggtctctgcttc |
264 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||||||| |
|
|
| T |
6609 |
cacccaagttcttattccatcattagtgtctgcttc |
6644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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