View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_low_38 (Length: 266)
Name: NF11396_low_38
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_low_38 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 20134556 - 20134318
Alignment:
| Q |
18 |
atctccaattctgtttacaggaatacttaagaatagatgattcgattttcataccaaaatagttattctattttcttgttcttattttaaatttgattgg |
117 |
Q |
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| T |
20134556 |
atctccaattctgtttacaggaatatttaagaatagatgattcgatcttcataccaaagtagttattctattttcttgttcttattttaaatttgattgg |
20134457 |
T |
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| Q |
118 |
cttgatgtagccggtggaacaatttaaatgattcctactcacagtcttgtatgtatggattttgttatgtaaattgataattaaaaattagtttctatgt |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20134456 |
cttgacacagccggtggaacaatttaaatgattcctactcacagtcttgtatgtatggattttgttatgtaaattgatgattaaaaattagtttctatgt |
20134357 |
T |
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| Q |
218 |
gaagttacacctctttaccttcttaaattgatatctgtg |
256 |
Q |
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| T |
20134356 |
gaagttacacctctttaccttcttaaattgatatctgtg |
20134318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 44357515 - 44357753
Alignment:
| Q |
18 |
atctccaattctgtttacaggaatacttaagaatagatgattcgattttcataccaaaatagttattctattttcttgttcttattttaaatttgattgg |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44357515 |
atctccaattctgtttacaggaatatttaagaatagatgattcgatcttcataccaaagtagttattctattttcttgttcttattttaaatttgattgg |
44357614 |
T |
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| Q |
118 |
cttgatgtagccggtggaacaatttaaatgattcctactcacagtcttgtatgtatggattttgttatgtaaattgataattaaaaattagtttctatgt |
217 |
Q |
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| T |
44357615 |
cttgacacagccggtggaacaatttaaatgattcctactcacagtcttgtatgtatggattttgttatgtaaattgatgattaaaaattagtttctatgt |
44357714 |
T |
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| Q |
218 |
gaagttacacctctttaccttcttaaattgatatctgtg |
256 |
Q |
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| T |
44357715 |
gaagttacacctctttaccttcttaaattgatatctgtg |
44357753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 47032 - 47272
Alignment:
| Q |
18 |
atctccaattctgtttacaggaatacttaagaatagatgattcgattttcataccaaaatagttattctattttcttg--ttcttattttaaatttgatt |
115 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || | |||||||||||||| |
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| T |
47032 |
atctccaattctgtttacaagaatacttaagaatagatgattcgatttttataccaaaatagttattctattttcttgggttaatgttttaaatttgatt |
47131 |
T |
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| Q |
116 |
ggcttgatgtagccggtggaacaatttaaatgattcctactcacagtcttgtatgtatggattttgttatgtaaattgataattaaaaattagtttctat |
215 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47132 |
agcttgatgtagccgggggaacaatttaaatgattcctactcacagtcttgtatgtatggattttgttatgtaaattgataattaaaaattagtttctat |
47231 |
T |
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| Q |
216 |
gtgaagttacacctctttaccttcttaaattgatatctgtg |
256 |
Q |
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| T |
47232 |
gtgaagttacacctctttaccttcttaaattgatatctgtg |
47272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 11203118 - 11203351
Alignment:
| Q |
18 |
atctccaattctgtttacaggaatacttaagaatagatgattcgattttcataccaaaatagttattctattttcttgttcttattttaaatttgattgg |
117 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11203118 |
atctccaattctgtttacagggatatttaagaatagatgattcgattttcacaccaaaatagttattctattttcttgttcttattttaaatttgattgg |
11203217 |
T |
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| Q |
118 |
cttgatgtagccggtggaacaatttaaatgattcctactcacagtcttgtatgtatggattttgttatgtaaattgataattaaaaattagtttctatgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | |
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| T |
11203218 |
cttgatgtagccggtggaacaatttaaatgattcctactcacaaccttgtatgtatggattttgctatgtaaactgataattaaaaattggtttctatat |
11203317 |
T |
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| Q |
218 |
gaagttacacctctttaccttcttaaattgatatct |
253 |
Q |
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| T |
11203318 |
gaagtt--acctccttaccttcttaaattgatatct |
11203351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 4431651 - 4431557
Alignment:
| Q |
19 |
tctccaattctgtttacaggaatacttaagaatagatgattcgattttcat------accaaaatagttattctattttcttgttcttattttaa |
107 |
Q |
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|||| ||||||||||| |||||| |||||| ||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
4431651 |
tctcaaattctgtttatgggaatatttaagataagatgattctattttcatttatataccaaaatagttattctattttctagttcttattttaa |
4431557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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