View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_low_41 (Length: 254)
Name: NF11396_low_41
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 14426967 - 14426727
Alignment:
| Q |
1 |
aatgtgaatgtaagttcttgggtgtctatagtattttctacacgacgaattgagcaaattttatggcaccgatttatgactttttaagaatcattttcag |
100 |
Q |
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| T |
14426967 |
aatgtgaatgtaagttcttgggtgtctatagtattttctgcacgacgaattgagcaaattttgtgggaccgatttatgactttttaagaatcattttcag |
14426868 |
T |
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| Q |
101 |
gttatagtgggtagttttactttggatggcaaaaattgtagctcaagtaacctgaaattggggccttcttcaatgacaatatctcaatttgctgctcctg |
200 |
Q |
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| T |
14426867 |
gttatagtgggtagttttactttggatggcaaaaattgtagctcaagtaacctgaaattggggtcttcttcaatgacgatatctcaatttgctgctccta |
14426768 |
T |
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| Q |
201 |
ggactccaactagtgctgctgcctctcaagggccttcatct |
241 |
Q |
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| T |
14426767 |
ggactccaactagtgctgctgcctctcaagggccttcatct |
14426727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 14416913 - 14416697
Alignment:
| Q |
3 |
tgtgaatgtaagttcttgggtgtctatagtattttctacacgacgaattgagcaaatttta-tggcaccgattt-atgactttttaagaatcattttcag |
100 |
Q |
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| T |
14416913 |
tgtgaatgcaagttcttgggtgtctattgtattttctgcatgatgaattgtgcaaatttttgtggcatcgattttatgactttttaagaatcattttcag |
14416814 |
T |
|
| Q |
101 |
gttatagtgggtagttttactttggatggcaaaaattgtagctcaagtaacctgaaattggggccttcttcaatgacaatatctcaatttgctgctcctg |
200 |
Q |
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| T |
14416813 |
gtcaaagtggcttgttttactttggatgacaaaaatggtagctcgagtaacctgaatttggggccttcttcaataccaatatcccaatttgctgcttttg |
14416714 |
T |
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| Q |
201 |
ggactccaactagtgct |
217 |
Q |
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| T |
14416713 |
ggactccaactagtgct |
14416697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 4867398 - 4867451
Alignment:
| Q |
82 |
ttttaagaatcattttcaggttatagtgggtagttttactttggatggcaaaaa |
135 |
Q |
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| T |
4867398 |
ttttaagaatcatttccaggtcatagtgggtagttttacattggatggcaaaaa |
4867451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 209
Target Start/End: Complemental strand, 3409833 - 3409698
Alignment:
| Q |
74 |
ttatgactttttaagaatcattttcaggttatagtgggtagttttactttggatggcaaaaattgtagctcaagtaacctgaaattggggccttcttcaa |
173 |
Q |
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| T |
3409833 |
ttatgacttattaaaaatcatttacaggtcactgtgggtagttttactttggatgttaagaaggctagctcgaataacttgaaaattgggccttcttcag |
3409734 |
T |
|
| Q |
174 |
tgacaatatctcaatttgctgctcctgggactccaa |
209 |
Q |
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| T |
3409733 |
tgccatcgtcccaaattgctgcttctgggactccaa |
3409698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 7159253 - 7159307
Alignment:
| Q |
82 |
ttttaagaatcattttcaggttatagtgggtagttttactttggatggcaaaaat |
136 |
Q |
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||||| ||||||||| ||||| |||||||| || |||||||||||||| |||||| |
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| T |
7159253 |
ttttatgaatcatttacaggtcatagtgggcagctttactttggatggaaaaaat |
7159307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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