View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11396_low_42 (Length: 250)

Name: NF11396_low_42
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11396_low_42
NF11396_low_42
[»] chr4 (9 HSPs)
chr4 (1-235)||(8186203-8186437)
chr4 (23-127)||(553759-553863)
chr4 (22-141)||(7225099-7225218)
chr4 (31-141)||(661866-661976)
chr4 (16-115)||(21833241-21833340)
chr4 (15-123)||(548007-548115)
chr4 (75-121)||(532794-532840)
chr4 (18-151)||(1755548-1755681)
chr4 (67-141)||(53760231-53760305)
[»] chr1 (2 HSPs)
chr1 (1-127)||(7555176-7555302)
chr1 (16-121)||(19467389-19467494)
[»] chr7 (4 HSPs)
chr7 (4-120)||(7977854-7977970)
chr7 (15-92)||(10169037-10169114)
chr7 (15-92)||(10176562-10176639)
chr7 (18-127)||(10615708-10615817)
[»] scaffold1155 (1 HSPs)
scaffold1155 (40-141)||(1824-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (40-141)||(8291-8392)
[»] scaffold0105 (1 HSPs)
scaffold0105 (40-141)||(30587-30688)
[»] chr8 (8 HSPs)
chr8 (11-96)||(18314621-18314706)
chr8 (23-151)||(17635584-17635712)
chr8 (24-148)||(32151969-32152093)
chr8 (39-127)||(34935939-34936027)
chr8 (18-141)||(17642873-17642996)
chr8 (20-121)||(14004140-14004241)
chr8 (20-128)||(5766556-5766664)
chr8 (24-56)||(18318666-18318698)
[»] chr3 (4 HSPs)
chr3 (16-127)||(13469601-13469712)
chr3 (30-116)||(51120619-51120705)
chr3 (15-141)||(51763328-51763454)
chr3 (24-141)||(51113135-51113252)
[»] chr6 (6 HSPs)
chr6 (18-127)||(6417087-6417196)
chr6 (30-141)||(9412131-9412239)
chr6 (41-105)||(7132323-7132387)
chr6 (41-105)||(7135246-7135310)
chr6 (41-105)||(7138169-7138233)
chr6 (23-63)||(28935338-28935378)
[»] chr5 (1 HSPs)
chr5 (95-151)||(32268607-32268663)
[»] chr2 (1 HSPs)
chr2 (16-112)||(1036578-1036674)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 8186437 - 8186203
Alignment:
Q  1 tgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8186437 tgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgtt 8186338  T
Q  101 agagagattgagtgatgtgaggttcaacgaaaaacgagagagttggcagaggacagtgttgaggcaaccattgtacaaagtgaagtcgagggaggtgaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8186337 agagagattgagtgatgtgaggttcaacgaaaaacgagagagatggcagaggacagtgttgaggcaaccattgtacaaagtgaagtcgagggaggtgaga 8186238  T
Q  201 ttagtaaacctttgaaaatcgcgacaaaagaaaga 235  Q
    |||||||||||||||||||||||||||||||||||    
T  8186237 ttagtaaacctttgaaaatcgcgacaaaagaaaga 8186203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 553759 - 553863
Alignment:
Q  23 ggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgagg 122  Q
    |||||| ||||| ||||||||||||||||| ||| |||||| | ||||||| |||||||| |||||||||||||| |  ||||||| |||||||||||||    
T  553759 ggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaatggtgggtttttgggagagatcgagtgatgtgagg 553858  T
Q  123 ttcaa 127  Q
    |||||    
T  553859 ttcaa 553863  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 7225218 - 7225099
Alignment:
Q  22 tggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgag 121  Q
    ||||||||||||| ||||||||||||||||||||| | || ||| || |||| |||  ||| |||||| ||| ||| || |||| ||| |||||||||||    
T  7225218 tggaacatgtgagagaggtcaaagttgtaatattttgagaaagagcttgcaacccacgtgctggaatgatggatttattcgagatattaagtgatgtgag 7225119  T
Q  122 gttcaacgaaaaacgagaga 141  Q
     ||||| | |||||||||||    
T  7225118 tttcaatggaaaacgagaga 7225099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 661866 - 661976
Alignment:
Q  31 tgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgaggttcaacga 130  Q
    |||| ||||| ||||||||||||| | |||||| | ||||||| ||||| || |||||||||| || ||| |||||||||||||| ||||  |||||||     
T  661866 tgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgagtgacgtgattttcaacgg 661965  T
Q  131 aaaacgagaga 141  Q
    | |||||||||    
T  661966 agaacgagaga 661976  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 21833340 - 21833241
Alignment:
Q  16 caatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtga 115  Q
    |||| |||||||| ||||| ||||||||||| ||||| ||| | |  | ||||||||| |||| ||| ||||||||||||||||| |||| |||||||||    
T  21833340 caattttggaacaagtgagagaggtcaaagtagtaatgttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtga 21833241  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 548007 - 548115
Alignment:
Q  15 tcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtg 114  Q
    |||||||||||||| ||||| ||| ||||||||||||  ||||| | ||  ||| |||| |||||||  ||||||  ||||| ||||||||||||||| |    
T  548007 tcaatgttggaacaagtgagagagttcaaagttgtaaactttcgtgcgaagacttgcaagccatttgtgggaatgaagggttggttagagagattgagcg 548106  T
Q  115 atgtgaggt 123  Q
    |||| ||||    
T  548107 atgtaaggt 548115  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 532794 - 532840
Alignment:
Q  75 ccatttgcaggaatggtgggtttgttagagagattgagtgatgtgag 121  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||||    
T  532794 ccatttgcgggaatggtgtgttggttagagagattgagtgatgtgag 532840  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 1755548 - 1755681
Alignment:
Q  18 atgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatg 117  Q
    ||||||||||||||||| ||||||||||||||||| ||| | |||| | || |||| || || |  ||||||| | ||| ||| |||||||| |  ||||    
T  1755548 atgttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaaccctttggtgggaatggcgtgttggttggagagattaaacgatg 1755647  T
Q  118 tgaggttcaacgaaaaacgagagagttggcagag 151  Q
    | || ||||| |  |||||||||| |||||||||    
T  1755648 taagtttcaatgggaaacgagagatttggcagag 1755681  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 53760305 - 53760231
Alignment:
Q  67 ctcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgaggttcaacgaaaaacgagaga 141  Q
    ||||||| ||||||||| | || |||| || ||| |||||||||||||||||||| ||||| |  ||||||||||    
T  53760305 ctcgcaacccatttgcatggatagtggattggttggagagattgagtgatgtgagtttcaatgggaaacgagaga 53760231  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 7555176 - 7555302
Alignment:
Q  1 tgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgtt 100  Q
    ||||||||||||| || || |||||||| ||||||||||| ||||||||||||||| |||||| | ||||||||||| ||||||| |||||||||| |||    
T  7555176 tgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcagggatggtgggttggtt 7555275  T
Q  101 agagagattgagtgatgtgaggttcaa 127  Q
     || | ||  |||||||| ||||||||    
T  7555276 ggaaatatcaagtgatgttaggttcaa 7555302  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 19467494 - 19467389
Alignment:
Q  16 caatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtga 115  Q
    |||||| | |||| ||||| ||||||||||||||||||||| | | || ||||||||| |||||||| ||||||||| || |||| |||| | |||| ||    
T  19467494 caatgtcgaaacaagtgagagaggtcaaagttgtaatattttgagtgaaaactcgcaacccatttgcgggaatggtgtgtctgttggagataatgagaga 19467395  T
Q  116 tgtgag 121  Q
    ||||||    
T  19467394 tgtgag 19467389  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 7977854 - 7977970
Alignment:
Q  4 tattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttaga 103  Q
    |||| |||||||||||||| |||||| |||||||||||||||||| ||||||| |||||| |||| |||| ||||  || |||||||| || | ||| ||    
T  7977854 tattaatagattcaatgttagaacatttgagtgaggtcaaagttgcaatattttgggagaaaactggcaacccataagccggaatggtagggtggttgga 7977953  T
Q  104 gagattgagtgatgtga 120  Q
    |||||||||||| ||||    
T  7977954 gagattgagtgacgtga 7977970  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 10169114 - 10169037
Alignment:
Q  15 tcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtg 92  Q
    ||||||| |||||| ||||| |||||||||||| |||||||| | |||| ||||||||| |||||||| |||||||||    
T  10169114 tcaatgtcggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgcgggaatggtg 10169037  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 10176639 - 10176562
Alignment:
Q  15 tcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtg 92  Q
    ||||||| |||||| ||||| |||||||||||| |||||||| | |||| ||||||||| |||||||| |||||||||    
T  10176639 tcaatgtcggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgcgggaatggtg 10176562  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 10615708 - 10615817
Alignment:
Q  18 atgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatg 117  Q
    |||| |||||| ||||| ||||||||||||||||| ||| |||||| | |||| || |||||||| ||||  ||||||| ||| || | ||| |||||||    
T  10615708 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaactgtgggttggttggaaatattaagtgatg 10615807  T
Q  118 tgaggttcaa 127  Q
    ||| ||||||    
T  10615808 tgatgttcaa 10615817  T

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Target: scaffold1155 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 1925 - 1824
Alignment:
Q  40 tcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgaggttcaacgaaaaacgaga 139  Q
    ||||||||||||||||| |||| | ||||||||| |||| ||| |||||  |||||| ||  |||||||||||||||||||||||||| |  ||||||||    
T  1925 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 1826  T
Q  140 ga 141  Q
    ||    
T  1825 ga 1824  T

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Target: scaffold0345 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 141
Target Start/End: Original strand, 8291 - 8392
Alignment:
Q  40 tcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgaggttcaacgaaaaacgaga 139  Q
    ||||||||||||||||| |||| | ||||||||| |||| ||| |||||  |||||| ||  |||||||||||||||||||||||||| |  ||||||||    
T  8291 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 8390  T
Q  140 ga 141  Q
    ||    
T  8391 ga 8392  T

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Target: scaffold0105 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 30688 - 30587
Alignment:
Q  40 tcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgaggttcaacgaaaaacgaga 139  Q
    ||||||||||||||||| |||| | ||||||||| |||| ||| |||||  |||||| ||  |||||||||||||||||||||||||| |  ||||||||    
T  30688 tcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgaga 30589  T
Q  140 ga 141  Q
    ||    
T  30588 ga 30587  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 18314706 - 18314621
Alignment:
Q  11 agattcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtt 96  Q
    ||||| |||||  ||||||| ||||||||||||||||||||||||| | |||| |||||| || |||||||| |||||||||||||    
T  18314706 agattgaatgtaagaacatgagagtgaggtcaaagttgtaatattttgagagaaaactcgtaagccatttgcgggaatggtgggtt 18314621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 17635712 - 17635584
Alignment:
Q  23 ggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgagg 122  Q
    |||||| ||||| |||||||||||||||||||| ||||||| | |||| || ||||| |  ||||||||| ||| ||| || |||||||||||| ||||     
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgagtgatatgagt 17635613  T
Q  123 ttcaacgaaaaacgagagagttggcagag 151  Q
    ||||| | |||| |||||| || ||||||    
T  17635612 ttcaatggaaaaggagagatttcgcagag 17635584  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 32151969 - 32152093
Alignment:
Q  24 gaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgaggt 123  Q
    ||||| ||||| ||||||||||||||||| ||| |||||| | || | |  |||||  |||| |||||  ||||||| ||||||||||||||||||||||    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaaagcttgtatcccattcacaggtatggtaagtttgttggagagattgagtgatgtgaggt 32152068  T
Q  124 tcaacgaaaaacgagagagttggca 148  Q
    ||||||  ||| |||||| ||||||    
T  32152069 tcaacgggaaatgagagatttggca 32152093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 34936027 - 34935939
Alignment:
Q  39 gtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgaggttcaa 127  Q
    |||||||||||||||||| | |||| ||||||||| ||||||   |||||| |||| | ||| ||||||||||||||||| ||||||||    
T  34936027 gtcaaagttgtaatattttgtgagaaaactcgcaaaccattttgtggaatgatgggatggttggagagattgagtgatgtaaggttcaa 34935939  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 17642996 - 17642873
Alignment:
Q  18 atgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatg 117  Q
    |||| |||||| ||||| ||||||||||||||||||||  |||||| | || | || ||||| |  ||||||||| | | ||| ||||||||||||||||    
T  17642996 atgtgggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatg 17642897  T
Q  118 tgaggttcaacgaaaaacgagaga 141  Q
    |||| ||||| | ||||| |||||    
T  17642896 tgagtttcaatggaaaacaagaga 17642873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 14004140 - 14004241
Alignment:
Q  20 gttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtg 119  Q
    |||||||||  | |||||||||||||||||||| ||  | |||| | ||||||| ||||| ||||||| | |||||| ||| || |||||||| ||||||    
T  14004140 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtg 14004239  T
Q  120 ag 121  Q
    ||    
T  14004240 ag 14004241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 5766664 - 5766556
Alignment:
Q  20 gttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtg 119  Q
    |||||||||  | |||||||||||||||||||| ||  | |||| | ||||||| ||||| ||||||| | || ||| ||| || |||||||| ||||||    
T  5766664 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 5766565  T
Q  120 aggttcaac 128  Q
    || ||||||    
T  5766564 agtttcaac 5766556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 18318698 - 18318666
Alignment:
Q  24 gaacatgtgagtgaggtcaaagttgtaatattt 56  Q
    |||||||||||||||||||||||||||||||||    
T  18318698 gaacatgtgagtgaggtcaaagttgtaatattt 18318666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 13469712 - 13469601
Alignment:
Q  16 caatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtga 115  Q
    |||||| |||||| ||||| |||||||  |||||| | ||| |||||| | |||| || |||||||||||||  ||||||| ||| |||||||| |||||    
T  13469712 caatgtgggaacaagtgagagaggtcagcgttgtattcttttgggagaaagctcgtaacccatttgcaggaacagtgggttggttggagagattaagtga 13469613  T
Q  116 tgtgaggttcaa 127  Q
    ||||| ||||||    
T  13469612 tgtgatgttcaa 13469601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 116
Target Start/End: Complemental strand, 51120705 - 51120619
Alignment:
Q  30 gtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgat 116  Q
    |||||||| ||||||||||||| |||| | |||| | ||||||||||||| ||| || |||||||| |||| ||||||| |||||||    
T  51120705 gtgagtgaagtcaaagttgtaacattttgagagaaagctcgcaatccattggcaagattggtgggtgtgttggagagatggagtgat 51120619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 51763454 - 51763328
Alignment:
Q  15 tcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtg 114  Q
    ||||||| |||||| ||||| || |||||||||||||| ||| | || | ||||||||| ||||||| ||||| |||  | |  || |||||||| ||||    
T  51763454 tcaatgtgggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttgtaggaaaggtaagctgtttggagagattaagtg 51763355  T
Q  115 atgtgaggttcaacgaaaaacgagaga 141  Q
    ||||||| ||||| |  ||||||||||    
T  51763354 atgtgagtttcaatgggaaacgagaga 51763328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 51113252 - 51113135
Alignment:
Q  24 gaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgaggt 123  Q
    ||||| ||||| ||||||| |||||||||||||   |||| | |||||||||||||||  |||||  ||  |||||| |||| ||||||||| || || |    
T  51113252 gaacaagtgagagaggtcagagttgtaatattttccgagaaagctcgcaatccatttgtgggaataatgcttttgttggagatattgagtgaagtaagtt 51113153  T
Q  124 tcaacgaaaaacgagaga 141  Q
    |||| |  ||||||||||    
T  51113152 tcaatgggaaacgagaga 51113135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 6417087 - 6417196
Alignment:
Q  18 atgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatg 117  Q
    |||| |||||| ||||| ||||||||||||||| | ||| |||||| | |||| || |||||| | ||||  ||||||| ||| |||| ||| |||||||    
T  6417087 atgtgggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaacccatttacgggaaaagtgggttggttggagatattaagtgatg 6417186  T
Q  118 tgaggttcaa 127  Q
    ||| ||||||    
T  6417187 tgatgttcaa 6417196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 9412131 - 9412239
Alignment:
Q  30 gtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgaggttcaacg 129  Q
    |||| |||||| ||||||||||||||| |||||| | ||||||| |||   || ||||||||| | | ||| |||||||| ||||||| ||| ||||| |    
T  9412131 gtgaatgaggttaaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatg 9412227  T
Q  130 aaaaacgagaga 141  Q
     |||||||||||    
T  9412228 gaaaacgagaga 9412239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 7132323 - 7132387
Alignment:
Q  41 caaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagaga 105  Q
    |||||||||||| ||| |||||| | ||||||| ||||||||||||| |||| ||| ||| ||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggaga 7132387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 7135246 - 7135310
Alignment:
Q  41 caaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagaga 105  Q
    |||||||||||| ||| |||||| | ||||||| ||||||||||||| |||| ||| ||| ||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggaga 7135310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 7138169 - 7138233
Alignment:
Q  41 caaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagaga 105  Q
    |||||||||||| ||| |||||| | ||||||| ||||||||||||| |||| ||| ||| ||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggaga 7138233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 28935338 - 28935378
Alignment:
Q  23 ggaacatgtgagtgaggtcaaagttgtaatatttcgggaga 63  Q
    |||||||||||||||||| ||||||||||| ||| ||||||    
T  28935338 ggaacatgtgagtgaggttaaagttgtaatgttttgggaga 28935378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 32268607 - 32268663
Alignment:
Q  95 tttgttagagagattgagtgatgtgaggttcaacgaaaaacgagagagttggcagag 151  Q
    |||||| |||||||||||||| ||||| ||||| | ||||||||||| ||| |||||    
T  32268607 tttgtttgagagattgagtgacgtgagtttcaatggaaaacgagagatttgacagag 32268663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 1036674 - 1036578
Alignment:
Q  16 caatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgag 112  Q
    |||||||||||||  |||| || |||||||||||||||||| |||||| | |||| || ||| | || || ||| | |||| ||| |||||||||||    
T  1036674 caatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 1036578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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