View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11396_low_44 (Length: 240)

Name: NF11396_low_44
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11396_low_44
NF11396_low_44
[»] chr1 (3 HSPs)
chr1 (1-77)||(14427209-14427285)
chr1 (14-74)||(14417165-14417224)
chr1 (146-224)||(14417297-14417375)


Alignment Details
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 14427209 - 14427285
Alignment:
Q  1 agaaaattgaactaacacatttagttatgtaaattaactatcaaagtacccataatgacattttcacacgtacacaa 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14427209 agaaaattgaactaacacatttagttatgtaaattaactatcaaagtacccacaatgacattttcacacgtacacaa 14427285  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 14417165 - 14417224
Alignment:
Q  14 aacacatttagttatgtaaattaactatcaaagtacccataatgacattttcacacgtaca 74  Q
    ||||||||||||||||||||  |||||||| ||||  |||||||||||||||||| |||||    
T  14417165 aacacatttagttatgtaaaacaactatcatagta-tcataatgacattttcacatgtaca 14417224  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 14417297 - 14417375
Alignment:
Q  146 ttttactttcaaataaccatagaaagtgacattttttaaaatagatataacactgggaaatgcatgtgacctactcaac 224  Q
    ||||||||||||||||| |||| |||||||||| ||||| ||| | |||||||  | |||||| |||||| || |||||    
T  14417297 ttttactttcaaataactataggaagtgacattatttaatataaacataacacatgaaaatgcgtgtgacatattcaac 14417375  T

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