View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11396_low_49 (Length: 235)

Name: NF11396_low_49
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11396_low_49
NF11396_low_49
[»] chr8 (4 HSPs)
chr8 (9-219)||(44912588-44912798)
chr8 (11-189)||(44913573-44913751)
chr8 (140-208)||(25479794-25479862)
chr8 (139-212)||(6414582-6414655)
[»] chr4 (4 HSPs)
chr4 (29-186)||(40414457-40414615)
chr4 (61-189)||(24412778-24412906)
chr4 (82-181)||(24412922-24413021)
chr4 (136-218)||(26905317-26905398)
[»] chr6 (1 HSPs)
chr6 (30-177)||(5437791-5437938)
[»] chr1 (3 HSPs)
chr1 (60-177)||(30647445-30647565)
chr1 (60-177)||(30642631-30642748)
chr1 (137-177)||(51866548-51866588)
[»] chr3 (3 HSPs)
chr3 (107-177)||(22931765-22931835)
chr3 (136-177)||(36082722-36082763)
chr3 (9-68)||(1299260-1299318)
[»] scaffold0019 (1 HSPs)
scaffold0019 (136-203)||(59575-59642)
[»] chr2 (1 HSPs)
chr2 (136-177)||(7468129-7468170)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 44912588 - 44912798
Alignment:
Q  9 gagagaagaaagagaatattaattgttgtaatcttatgagttttattaattgtgaaaagtgactacatcatatcttatataagaagcttatttacatcgc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44912588 gagagaagaaagagaatattaattgttgtaatcttatgagttttattaattgtgaaaagtgactacatcatgtcttatataagaagcttatttacatcgc 44912687  T
Q  109 ttgtttagtaagctatctaaacaaacataacaaacttagctagattatctaactaacttgtaacaaacttttaaaccccaatatgtataatatatacccc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  44912688 ttgtttagtaagctatctaaacaaacataacaaacttagctagattacctaactaacttgtaacaaacttttataccccaatatgtataatatatacccg 44912787  T
Q  209 aacgggtatat 219  Q
    |||||||||||    
T  44912788 aacgggtatat 44912798  T

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Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 44913573 - 44913751
Alignment:
Q  11 gagaagaaagagaatattaattgttgtaatcttatgagttttattaattgtgaaaagtgactacatcatatcttatataagaagcttatttacatcgctt 110  Q
    ||||| |||||||  |||||||||||||||||||||||||| |||| ||||||||||||| ||||||||  ||||||||| ||||||||| |||| ||||    
T  44913573 gagaataaagagatgattaattgttgtaatcttatgagtttcattagttgtgaaaagtgattacatcatgccttatataaaaagcttattcacattgctt 44913672  T
Q  111 gtttagtaagctatctaaacaaacataacaaacttagctagattatctaactaacttgtaacaaacttttaaaccccaa 189  Q
    | ||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||| || |||||||    
T  44913673 gcttagtaagctatctaaacaaacataacaaatatagctagattacctaactaacttgtaacaaacttctataccccaa 44913751  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 25479862 - 25479794
Alignment:
Q  140 aaacttagctagattatctaactaacttgtaacaaacttttaaaccccaatatgtataatatatacccc 208  Q
    |||||||||||||||  ||||||||||| ||||||||||||| ||||| | | ||||||||||||||||    
T  25479862 aaacttagctagatttcctaactaacttttaacaaacttttatacccctacaagtataatatatacccc 25479794  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 6414655 - 6414582
Alignment:
Q  139 caaacttagctagattatctaactaacttgtaacaaacttttaaaccccaatatgtataatatataccccaacg 212  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||| ||||| |   ||||||||||| ||||||||    
T  6414655 caaacttagcttgattacctaactaacttgtgacaaacttttatacccccaagggtataatatattccccaacg 6414582  T

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Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 40414457 - 40414615
Alignment:
Q  29 aattgttgtaatcttatgagtttt-attaattgtgaaaagtgactacatcatatcttatataagaagcttatttacatcgcttgtttagtaagctatcta 127  Q
    ||||||||||| |||| ||||||| |||| | ||||||||||| |||| |||  ||||||||||| |||||||||||| ||||| |||||||||||||||    
T  40414457 aattgttgtaaacttacgagttttcattattagtgaaaagtgattacaacatgccttatataagaggcttatttacattgcttgcttagtaagctatcta 40414556  T
Q  128 aacaaacataacaaacttagctagattatctaactaacttgtaacaaacttttaaaccc 186  Q
    |||||||||||||||||||| ||||||| ||||||||||||||| |||| |||| ||||    
T  40414557 aacaaacataacaaacttagttagattaactaactaacttgtaataaacctttataccc 40414615  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 24412778 - 24412906
Alignment:
Q  61 tgaaaagtgactacatcatatcttatataagaagcttatttacatcgcttgtttagtaagctatctaaacaaacataacaaacttagctagattatctaa 160  Q
    |||||||||| |||| | |  ||||||||||| ||||||| |||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||  |||    
T  24412778 tgaaaagtgattacaacgtgccttatataagaggcttattcacattgcttgcttagtaaactatctaaacaaacataacaaacttagttagattacataa 24412877  T
Q  161 ctaacttgtaacaaacttttaaaccccaa 189  Q
    || |||||||||||||||||| |||||||    
T  24412878 cttacttgtaacaaacttttataccccaa 24412906  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 24412922 - 24413021
Alignment:
Q  82 cttatataagaagcttatttacatcgcttgtttagtaagctatctaaacaaacataacaaacttagctagattatctaactaacttgtaacaaactttta 181  Q
    ||||||||||| ||||||| |||| ||||| |||| || |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  24412922 cttatataagaggcttattcacattgcttgcttagcaaactatctaaccaaacgtaacaaacttagctagattacctaactaacttgtaacaaactttta 24413021  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 26905398 - 26905317
Alignment:
Q  136 taacaaacttagctagattatctaactaacttgtaacaaacttttaaaccccaatatgtataatatataccccaacgggtata 218  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||   | ||||||||||||| |||| |||||||    
T  26905398 taacaaacttagctagattttctaactaacttgtaacaaacttttatacccc-ccaagtataatatatactccaatgggtata 26905317  T

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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 177
Target Start/End: Complemental strand, 5437938 - 5437791
Alignment:
Q  30 attgttgtaatcttatgagttttattaattgtgaaaagtgactacatcatatcttatataagaagcttatttacatcgcttgtttagtaagctatctaaa 129  Q
    |||||||||||||  ||||||| |||| ||||||||| ||| |||| |||  ||||||||||| ||||||| |||| ||||| |||||||||||||||||    
T  5437938 attgttgtaatctattgagtttcattagttgtgaaaaatgattacaacatgccttatataagaggcttattcacattgcttgcttagtaagctatctaaa 5437839  T
Q  130 caaacataacaaact-tagctagattatctaactaacttgtaacaaact 177  Q
    |||||||||||||||  |||||| || |||||||||| |||||||||||    
T  5437838 caaacataacaaactcaagctag-ttttctaactaacctgtaacaaact 5437791  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 30647565 - 30647445
Alignment:
Q  60 gtgaaaagtgactacatcatatcttatataagaagcttatttacatcgcttgtttagtaagctatctaaacaaacataacaaact-tagctagat---ta 155  Q
    ||||||||||| |||| |||  ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||||  |||||| |   ||    
T  30647565 gtgaaaagtgattacaacatgccttatataagaggcttatttacat-gcttggttagtaagctatctaaacaaacataaccaactcaagctagctctcta 30647467  T
Q  156 tctaactaacttgtaacaaact 177  Q
     |||||||||||||||||||||    
T  30647466 actaactaacttgtaacaaact 30647445  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 177
Target Start/End: Complemental strand, 30642748 - 30642631
Alignment:
Q  60 gtgaaaagtgactacatcatatcttatataagaagcttatttacatcgcttgtttagtaagctatctaaacaaacataacaaact-tagctagattatct 158  Q
    ||||||||||| |||| |||  ||||||||||| |||||||||| | |||||  |||||| ||||||||||||||||||| ||||  | |||| || |||    
T  30642748 gtgaaaagtgattacagcatgccttatataagaggcttatttaccttgcttgcatagtaaactatctaaacaaacataaccaactcaatctag-ttctct 30642650  T
Q  159 aactaacttgtaacaaact 177  Q
    | |||||||||||||||||    
T  30642649 agctaacttgtaacaaact 30642631  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 51866548 - 51866588
Alignment:
Q  137 aacaaacttagctagattatctaactaacttgtaacaaact 177  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  51866548 aacaaacttagctagatcatctaactaacttgtaacaaact 51866588  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 22931765 - 22931835
Alignment:
Q  107 gcttgtttagtaagctatctaaacaaacataacaaacttagctagattatctaactaacttgtaacaaact 177  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||| || | || ||| ||||||||||||||    
T  22931765 gcttgcttagtaagcaatctaaacaaacttaacaaacttagctacatcacctgactcacttgtaacaaact 22931835  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 36082763 - 36082722
Alignment:
Q  136 taacaaacttagctagattatctaactaacttgtaacaaact 177  Q
    |||||||||||||||||| | |||||||||||||||||||||    
T  36082763 taacaaacttagctagatcacctaactaacttgtaacaaact 36082722  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 1299318 - 1299260
Alignment:
Q  9 gagagaagaaagagaatattaattgttgtaatcttatgagttttattaattgtgaaaagt 68  Q
    ||||| |||||||||| |||| ||||||||||||||||||||| |||| | |||||||||    
T  1299318 gagaggagaaagagaagatta-ttgttgtaatcttatgagtttcattagtagtgaaaagt 1299260  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 59575 - 59642
Alignment:
Q  136 taacaaacttagctagattatctaactaacttgtaacaaacttttaaaccccaatatgtataatatat 203  Q
    ||||||||||||| |||||  ||||||||||||||||||| ||||| ||||| | ||||||| |||||    
T  59575 taacaaacttagcaagatttcctaactaacttgtaacaaatttttatacccccacatgtatattatat 59642  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 7468129 - 7468170
Alignment:
Q  136 taacaaacttagctagattatctaactaacttgtaacaaact 177  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  7468129 taacaaacttagctaggtcatctaactaacttgtaacaaact 7468170  T

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