View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11396_low_50 (Length: 233)

Name: NF11396_low_50
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11396_low_50
NF11396_low_50
[»] chr5 (6 HSPs)
chr5 (14-216)||(7141587-7141789)
chr5 (28-212)||(7154361-7154545)
chr5 (82-209)||(7131870-7131997)
chr5 (25-170)||(41305312-41305457)
chr5 (28-89)||(31177694-31177755)
chr5 (76-164)||(41337787-41337875)
[»] chr3 (1 HSPs)
chr3 (28-170)||(22986265-22986407)
[»] chr6 (2 HSPs)
chr6 (93-172)||(12425274-12425353)
chr6 (95-172)||(12268332-12268409)
[»] chr8 (1 HSPs)
chr8 (28-173)||(23610205-23610350)
[»] chr4 (1 HSPs)
chr4 (93-172)||(55954947-55955026)
[»] chr2 (1 HSPs)
chr2 (127-172)||(41795747-41795792)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 7141789 - 7141587
Alignment:
Q  14 caaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctgg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141789 caaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctgg 7141690  T
Q  114 aataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatttataaagactgtagtattttttggtatatcatacccatctatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141689 aataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcatttataaagactgtagtattttttggtatatcatacccatctatt 7141590  T
Q  214 ttg 216  Q
    |||    
T  7141589 ttg 7141587  T

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Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 7154545 - 7154361
Alignment:
Q  28 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcag 127  Q
    ||||||||||| |||||||| || |||||||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||    
T  7154545 ggacacattcttcttccagcaccaaaaggaatatactcaaaattatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcag 7154446  T
Q  128 catcattccaatatttaggatctcttcctattgcccatgcatttataaagactgtagtattttttggtatatcatacccatctat 212  Q
    ||||| |||||||||  ||||||||| | | ||||||||||||||| |  ||| |||||||||||||||| ||||| ||||||||    
T  7154445 catcagtccaatattgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctat 7154361  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 209
Target Start/End: Complemental strand, 7131997 - 7131870
Alignment:
Q  82 aaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatttataaagactg 181  Q
    ||||||||  ||||| | ||||| ||||||||| ||||| ||||||||||| ||||||||| |||||| ||| | || |||||| |||| || | ||||     
T  7131997 aaatcaatagaactaccttcaaatctctctggattaaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactt 7131898  T
Q  182 tagtattttttggtatatcatacccatc 209  Q
    |||| ||||||||||||||||| |||||    
T  7131897 tagtcttttttggtatatcataaccatc 7131870  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 41305457 - 41305312
Alignment:
Q  25 cccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctct 124  Q
    ||||||||||| ||||||||||| || || || ||||| || ||||   | ||||||||||||||  | |||| | |||||||||| ||  |||| ||||    
T  41305457 cccggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactct 41305358  T
Q  125 cagcatcattccaatatttaggatctcttcctattgcccatgcatt 170  Q
    |||| |||  |||||| || ||||||||||| || ||||| |||||    
T  41305357 cagcttcaacccaatactttggatctcttccaatcgcccaagcatt 41305312  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 31177694 - 31177755
Alignment:
Q  28 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaat 89  Q
    ||||||||||| |||||||| ||||| || |||||||| |||||  | ||||||||||||||    
T  31177694 ggacacattcttcttccagcaccgaacggtatgtactcaaagtttgtacctttgaaatcaat 31177755  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 41337875 - 41337787
Alignment:
Q  76 cctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgccca 164  Q
    ||||||||||||||  | |||| | |||||||||| ||  |||| |||||||| |||  |||||| || ||||||||||| ||||||||    
T  41337875 cctttgaaatcaattgagctattaacaaacctctcaggtttaaaactctcagcttcaacccaatactttggatctcttccaattgccca 41337787  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 22986265 - 22986407
Alignment:
Q  28 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcag 127  Q
    ||||| |||||||||||||| || || ||||||||||| || ||| ||||||||||||||||  ||||||||  ||||||||| |||  |||| | || |    
T  22986265 ggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaacttatcgg 22986364  T
Q  128 catcattccaatatttaggatctcttcctattgcccatgcatt 170  Q
      |||||||||||||||||||| | ||| || ||||| |||||    
T  22986365 ggtcattccaatatttaggatcccgtccaatggcccaagcatt 22986407  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 12425274 - 12425353
Alignment:
Q  93 actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 172  Q
    |||||||| ||||||||| || |||||| |||||||||||  ||||| ||  ||||||||||| ||||||||||||||||    
T  12425274 actatcatgaaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccatgcattta 12425353  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 12268409 - 12268332
Alignment:
Q  95 tatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 172  Q
    |||||| ||||||||| || |||||| |||| ||||||  |||||  || ||||||||||| ||||||||||||||||    
T  12268409 tatcatgaaacctctcaggtataaacttctctgcatcagaccaatgattgggatctcttccaattgcccatgcattta 12268332  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 23610205 - 23610350
Alignment:
Q  28 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcag 127  Q
    ||||| |||||||| ||||| || || |||||| |||| || ||| |||||  |||||||||  | ||||||  |||||| || |||  |||| | || |    
T  23610205 ggacaaattctcctaccagcaccaaatggaatgaactcaaaattagttcctgagaaatcaatagagctatcaataaacctttcaggataaaacttatctg 23610304  T
Q  128 catcattccaatatttaggatctcttcctattgcccatgcatttat 173  Q
      |||||||||||||||||||| |||||||||||||| ||||||||    
T  23610305 ggtcattccaatatttaggatcccttcctattgcccaagcatttat 23610350  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 55954947 - 55955026
Alignment:
Q  93 actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 172  Q
    |||||||| |||||| || || |||||| |||  ||||||| ||||| ||| ||||||||||| ||||||||||||||||    
T  55954947 actatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcattta 55955026  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 41795747 - 41795792
Alignment:
Q  127 gcatcattccaatatttaggatctcttcctattgcccatgcattta 172  Q
    |||||||  |||||||| ||||||||||| ||||||||||||||||    
T  41795747 gcatcatatcaatatttgggatctcttccgattgcccatgcattta 41795792  T

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