View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11396_low_7 (Length: 592)
Name: NF11396_low_7
Description: NF11396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11396_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 18 - 579
Target Start/End: Complemental strand, 33824688 - 33824119
Alignment:
| Q |
18 |
gaatcatcatcattaagtagttcatctcttatagtcaccttcttggaaccttcactactgagaggtaacaacatgcccttaaaaaaggcttgatctgctg |
117 |
Q |
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| T |
33824688 |
gaatcatcatcattaagtagttcatctcttatagtcaccttcttggaaccttcactactgagaggtaacaacatgcccttaaaaaaggcttgatctgctg |
33824589 |
T |
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| Q |
118 |
atatcatagaatagtttttgacagagaattcgaaatccgaagagacaggagcttctctgtatatgttttcatgtttgattgcttgttggctaacaacaaa |
217 |
Q |
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| T |
33824588 |
atatcatagaatagtttttgacagagaattcgaaatccgaagagacaggagcttctctgtatatgttttcatgtttgattgcttgttggctaacaacaaa |
33824489 |
T |
|
| Q |
218 |
atcattggagaaggaaattcttggatccatggttaaattagctcatgcgctacacagattttgatgcttattgttgaatattgttcgctttgaagggtta |
317 |
Q |
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| T |
33824488 |
atcattggagaaggaaattcttggatccatggttaaattagctcatgcgctacacagattttgatgcttattgttgaatattgttcgctttgaagggtta |
33824389 |
T |
|
| Q |
318 |
gtttccacatgcagatgtttacctttatataatgatggtgaattggtgataatgtattatatgtgcttatttaattagtggccataacatgttacttaga |
417 |
Q |
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| T |
33824388 |
gtttccacatgcagatgtttacctttatataatgatggtgaattggtgataatgtattatgtgtgcttatttaattagtgggcataacatgttacttaga |
33824289 |
T |
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| Q |
418 |
tttgtcttcttatgcttggaatatgggttttcacattttcccttaagatcacttgatgattaataggttcataagttgtgacactatatgttaatatcta |
517 |
Q |
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| T |
33824288 |
tttgtcttcttatgcttggaatgtgggttttcacattttcccttaagatcgcttgatgattaataggttcataagttgtgacactatatgttaatatcta |
33824189 |
T |
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| Q |
518 |
ttagcca--------ttgatcacatatttgaactacattaaccatctaatttgttgttgagtttgatgtc |
579 |
Q |
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| T |
33824188 |
ttagccatctatgtgttgatcacatatttaaactacattaaccatctaatttgttgttgagtttgatgtc |
33824119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 533 - 579
Target Start/End: Original strand, 12117149 - 12117196
Alignment:
| Q |
533 |
atatttgaactacattaaccatctaatttgttgttg-agtttgatgtc |
579 |
Q |
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| T |
12117149 |
atatttgaactacattaaccatataaattgttgttgaagtttgatgtc |
12117196 |
T |
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