View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11397_low_1 (Length: 838)
Name: NF11397_low_1
Description: NF11397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11397_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 654
Target Start/End: Original strand, 50408514 - 50409166
Alignment:
| Q |
18 |
aaatatagggaatcaattataatatctaattttggctatacatgaatgaattttgtgtattcaactttggcattttcttgcgtgcaacattttgctgtct |
117 |
Q |
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| T |
50408514 |
aaatatagggaatcaattataatatctaattttggctatacatgaatgaattttgtgtattcaactttggcattttcttgtgtccaacattttgctgtct |
50408613 |
T |
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| Q |
118 |
cagctacgtgcttggtttggcaccatatagcaaattgttagttacttgtttaaagtaaattaacaatgatgattacttgtaaaaagaataaaaaatcaca |
217 |
Q |
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| T |
50408614 |
cagctacgtgcttggtttggcaccatatagcaaattgttagttacttgtttaaagtaaattaacaatgatgattacttgtaaaaagaataaaaaatcaca |
50408713 |
T |
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| Q |
218 |
a------tgatgaatccaattcagtgggagatactaaaaagagagctataaacttttaacaattgaaaagagagcaaaataagattctatgctattttat |
311 |
Q |
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| T |
50408714 |
atcatattcatgaatccaattcagtgggagatactaaaaagagagctataaacttttaataattgaaaagagagcaaaataagattctatgctattttat |
50408813 |
T |
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| Q |
312 |
tatattacttttaagcagtacatgtg-----------atagtaagccaagtatactaaaccgagtaaattatatgcatagnnnnnnnnnattttattaaa |
400 |
Q |
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| T |
50408814 |
tatattacttttaagcagtacatgtgactactataaaatagtaacccaagtatactaaaccgagtaaattatatgcatag--tttttttattttattaaa |
50408911 |
T |
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| Q |
401 |
aatatctttgtttacctaggcaatgttcactcatgtgaaagagtaccaattactcaatttgcaattgtaaaatatcaagaaggcaacgagtttaaagctc |
500 |
Q |
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| T |
50408912 |
aatttctttgtttacctaggcaatgttcactcatgtgaaggagtaccaattactcaatttgcaattgtaaaatatcaagaagacaacgagtttaaagctc |
50409011 |
T |
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| Q |
501 |
tgtttgtggaaaaatatctcactcatgtccctatgagcatcattaacttaccaaaatatcctttattctaacaaattaaaaac-annnnnnnnnctttct |
599 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
50409012 |
tgtttgtggaaaaatatctcactcatgtccctatgaacatcattaacttaccaaaatatcctttattctaacaaattaaaaacaatttttttttctttct |
50409111 |
T |
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| Q |
600 |
caaatcccacatactccatcaaagatattgatggaacacaagtgagataaatgat |
654 |
Q |
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| T |
50409112 |
caaatcccacatattccatcaaagatatggatggaacacaagtgagataaatgat |
50409166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 701 - 763
Target Start/End: Original strand, 50409159 - 50409221
Alignment:
| Q |
701 |
taaaagatttggtatgaaatcatatcggatggattaaaaaagataaatgatatttgtaaaatc |
763 |
Q |
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| T |
50409159 |
taaatgatttggtatgaaatcatatcggatgatttaaaaaagataaatgatatttgtgaaatc |
50409221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 644 - 683
Target Start/End: Original strand, 50409199 - 50409238
Alignment:
| Q |
644 |
agataaatgatatttgtgaaattgtatctctatactcatg |
683 |
Q |
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| T |
50409199 |
agataaatgatatttgtgaaatcgtatctctatactcatg |
50409238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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