View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11397_low_3 (Length: 299)
Name: NF11397_low_3
Description: NF11397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11397_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 3 - 283
Target Start/End: Complemental strand, 10108962 - 10108690
Alignment:
| Q |
3 |
atggagacattggcactgaagatgagccgatggatctgaaatgacaaagtattaccactgctttcatgcaaactatgtgaccaaaatgttgtcaccataa |
102 |
Q |
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| T |
10108962 |
atggagacattagtactgaagaagagccgatggatctgaaatgacaaactattaccactgccttcatgcaaactatgtgaccaaaatgttgtcaccataa |
10108863 |
T |
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| Q |
103 |
caaaaaatgattcctaatgtctaatgtattctttagttttattctcttgtacttttctttataagatgatacctctggttattatatcatatatatttgg |
202 |
Q |
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| T |
10108862 |
caaaaaatgat-------gtctaatgtattctttagttttattcttttgtacttttctttataagatgatacctccggttattatatcatatatatttag |
10108770 |
T |
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| Q |
203 |
aaataaataaaattatgaaatcttcatacaagcttacaatcacatatacaagtaatagaacatgaaataaacggttcctat |
283 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
10108769 |
aaataaa-aatattatgaaatcttcatacaagcttacaatcacatatacaagtaatagaatataaaataaacggtccctat |
10108690 |
T |
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