View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11398_high_3 (Length: 395)
Name: NF11398_high_3
Description: NF11398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11398_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 383
Target Start/End: Complemental strand, 7818568 - 7818195
Alignment:
| Q |
19 |
aagagcaaagaagaagcaaaaacatcatacataaaagagaaatgataataaagttctttctcagtgattctt----gtgaacggattggagagaattgta |
114 |
Q |
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| T |
7818568 |
aagagcaaagaagaagcacaaacatcatacataaaagagaaacgataataaagttctttctcactgattctttcttgtgaacggattggagagaattgta |
7818469 |
T |
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| Q |
115 |
ttgggaaaaacccaa-----atataggtctttttgtacaaagaatttcacacatcaaagattgaatcgaccgttccaccttttctacattttgtcttcca |
209 |
Q |
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| T |
7818468 |
ttgggaaaaacctaagtctaatataggtctttttgtacaaagaatttcacacatcaaagattgaatcgaccgttccaccttttctacattttgtcttcca |
7818369 |
T |
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| Q |
210 |
caacaatattatcctaaggatgaatatgcattatgtgagtgtatataccttgagagagaaatacatatagaaaaatatgtaataagtatgataaatttgt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7818368 |
caacaatattatcctaaggatgaatatgcattatgtgagggtatataccttgagagagaaatacatatagaaaaatatgtgataagtatgataaatttgt |
7818269 |
T |
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| Q |
310 |
gatgtgatgggaaataattaagagataagagaatatgaggtgttaaataagtttaacaaaatatgttttgcctt |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7818268 |
gatgtgatgggaaataattaagagataagagaatatgaggtgttaaataagtttaacaaaatatgttttgcctt |
7818195 |
T |
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