View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11398_high_6 (Length: 238)
Name: NF11398_high_6
Description: NF11398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11398_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9466456 - 9466677
Alignment:
| Q |
1 |
atttgttctttatagcaggtttagagattaaggggcagattagtttgagcagttcatagtattttgaagttttcctatgttatactttaggccaggataa |
100 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9466456 |
atttgttctttgtagcaggtttagagattaaggggtagattagtttgagcagttcatagtattttgaagttttcctatgttatgctttaggccaggatag |
9466555 |
T |
|
| Q |
101 |
tatttatcacgtgagtcccatttgatttgcctttacatacaaaacacaggatagcagtgacctgcatgtatgtatgtaagcaatgtccaattcttaatat |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9466556 |
tatttatcacgtgaatcccatttgatttgcctttacatacaaaacacaggatagcagtgacctgcatgtatgtatgtaagcaatgtccaattcttaatat |
9466655 |
T |
|
| Q |
201 |
taaattatttcatgtaatgatt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
9466656 |
taaattatttcatgtaatgatt |
9466677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 9472030 - 9472231
Alignment:
| Q |
1 |
atttgttctttatagcaggtttagagattaaggggcagattagtttgagcagttcatagtattttgaagttttcctatgttatactttaggccaggataa |
100 |
Q |
| |
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||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9472030 |
atttgttctttgtaagaggtttagagattaaggggcagattagtttgagtagttcatagtattttgaagttttcctatgttatgctttaggccaggatag |
9472129 |
T |
|
| Q |
101 |
tatttatcacgtgagtcccatttgatttgcctttacatacaaaacacaggatagcagtgacctgcatgtatgtatgtaagcaatgtccaattcttaatat |
200 |
Q |
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| T |
9472130 |
tatttatcaggtgaatgtcatttgatttgcctttacatacaaaacacaggatagcagtgacctgc----atgtatgtaagcaatgttcaattcttaatat |
9472225 |
T |
|
| Q |
201 |
taaatt |
206 |
Q |
| |
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|||||| |
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| T |
9472226 |
taaatt |
9472231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5724199 - 5724416
Alignment:
| Q |
1 |
atttgttctttatagcaggtttagagattaaggggcagattagtttgagcagttcatagtattttgaagttttcctatgttatactttaggccaggataa |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5724199 |
atttgttctttgtagcaggtttagagattaaggggcagattagtttgagcagttcatagtattttgaagttttcctatgttatgctttaggccaggatag |
5724298 |
T |
|
| Q |
101 |
tatttatcacgtgagtcccatttgatttgcctttacatacaaaacacaggatagcagtgacctgcatgtatgtatgtaagcaatgtccaattcttaatat |
200 |
Q |
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||||||| | |||| | ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5724299 |
tatttataaggtgaatgccatttggtttgcctttacatacaaaacacaggatagcagtgacctgc----atgtatgtaagcaatgtccaattcttaatat |
5724394 |
T |
|
| Q |
201 |
taaattatttcatgtaatgatt |
222 |
Q |
| |
|
|||||| ||||||||||||||| |
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|
| T |
5724395 |
taaattctttcatgtaatgatt |
5724416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 44601231 - 44601433
Alignment:
| Q |
16 |
caggtttagagattaaggggcagattagtttgagcagttcatagtattttgaagttttcctatgttatactttaggccaggataatatttatcacgtgag |
115 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| |
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| T |
44601231 |
caggtttagagattaaggggcagattagtttaagcagttcaaagtattttgaagttttcctatgttatgctttaggccaggatagtatttatcaggtgaa |
44601330 |
T |
|
| Q |
116 |
tcccatttgatttgcctttacatacaaaacacaggatagcagtgacctgcatgtatgtatgtaagcaatgtccaattcttaatattaaattatttcatgt |
215 |
Q |
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| |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
44601331 |
tgccatttgatttgcctttatatagaaaacacaggatagcagtgacctgc----atgtatgtaagcaatatccaattcttaatattaaattctttcatgt |
44601426 |
T |
|
| Q |
216 |
aatgatt |
222 |
Q |
| |
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||||||| |
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|
| T |
44601427 |
aatgatt |
44601433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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