View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11398_low_1 (Length: 499)
Name: NF11398_low_1
Description: NF11398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11398_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 9e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 257 - 489
Target Start/End: Original strand, 43526769 - 43526990
Alignment:
| Q |
257 |
agaaggatattgatgtggaggcagcagcgaaggacgacgttgaagaatcatatccatttgttccttctgcctcctcctccattggagaacccaaaattga |
356 |
Q |
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| T |
43526769 |
agaaagatattgatgtggaggcagcagcgaaggacgacgttgaagaatcatatccatttgtcccttctgcctcctcctccattggagaacccaaaattga |
43526868 |
T |
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| Q |
357 |
cataaacaggatcaaaccacagtggaagcgcaagtaagtaatgtcatgtctatctatctatttagttattaacaatcatttttctttcatttcttcttaa |
456 |
Q |
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| T |
43526869 |
cataaacaggatcaaaccacagtggaagcgcaagtaagtaatgtcatatctatctatctatttagttattaacaa-----------tcatttcttcttaa |
43526957 |
T |
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| Q |
457 |
ttacttaatcatatatattttcacaggtctctg |
489 |
Q |
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| T |
43526958 |
ttacttaatcatatatattttcacaggtctctg |
43526990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 43526527 - 43526696
Alignment:
| Q |
20 |
tatctatctgagtgttggaattgaattgaattggaaaaagaattagaatgcgtggtgtgttgtgtagggtttgaacgaattcaagtgcttgtctgtagat |
119 |
Q |
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| T |
43526527 |
tatctatctgagtgttgtaattgaattgaattggaaaaagaattagaatgcgtggtgtgttgtgtagggtttgaacgaattcaagtgtctgtctgtagat |
43526626 |
T |
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| Q |
120 |
cgatcttctcttttcttgcgatactaactaaaatggactacaggaaaatcaaagaccaggtaggtcagtg |
189 |
Q |
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| T |
43526627 |
cgatcttctcttttcttgcgatactaactaaaatggactacaggaaaatcaaagaccaggtaggtcagtg |
43526696 |
T |
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