View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11398_low_2 (Length: 406)
Name: NF11398_low_2
Description: NF11398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11398_low_2 |
 | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 9466273 - 9465879
Alignment:
| Q |
1 |
atcatactatgttgatggcatttaacctacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttat |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9466273 |
atcatactatgttggtggcatttaacctacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttat |
9466174 |
T |
|
| Q |
101 |
gtgtaattctaaattgacccttttattgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaatgtatttt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9466173 |
gtgtaattctaaattgacctttttattgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaatgtatttt |
9466074 |
T |
|
| Q |
201 |
ttattaattgtctggaaatcatttatgaacgaagaacatttcgccaacatcaacaccagtctgagttcttaggttctcactctcacaccagtatttgggg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9466073 |
ttattaattgtctggaaatcatttatgaacgaagaacatttcaccaacatcaacaccagtctgagttcttaggttctcactctcacaccagtatttgggg |
9465974 |
T |
|
| Q |
301 |
ttgtcaccttcaccttcaccgtcattcctctttctctggtttcactcccaggttctcactccataggcatacctctctttctgtccctcgttcat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
9465973 |
ttgtcaccttcaccttcaccgtcattcctctttctctggtttcactcccaggttctcactccataggcatacctctctttctctccctctttcat |
9465879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 9464721 - 9464767
Alignment:
| Q |
16 |
tggcatttaacctacacaagtaactctttttgtgtaccatacaaaaa |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9464721 |
tggcatttaacctacacaagtaactctttttgtgtatcatacaaaaa |
9464767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 44309512 - 44309606
Alignment:
| Q |
102 |
tgtaattctaaattgaccc---ttttattgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaat |
193 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||||||| | |||||||| |||||||||||||||| ||||||| | |||||||| |||| |
|
|
| T |
44309512 |
tgtaattctaaattgacccccctttagtggtttaaatcaaagaacctccccaagacaacctaatatactactttggcctaattaatttctgcaat |
44309606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 21208947 - 21209138
Alignment:
| Q |
19 |
catttaacctacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaattctaaattgac |
118 |
Q |
| |
|
|||||| | ||||||| ||||||||||| ||| ||||||||||||| |||||||||||||| | ||| || || |||| | |||||||||||||||| |
|
|
| T |
21208947 |
catttagcatacacaaccaactctttttgggtatcatacaaaaagttattttaacctttaatattaggtggac-aggtttaagagtaattctaaattgac |
21209045 |
T |
|
| Q |
119 |
cc-ttttattgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaatgtattttttattaattgtc |
212 |
Q |
| |
|
|| ||||||||||| ||||||| || ||||| ||||||||||||||||||| ||| | ||| |||||||||| | |||||||||||||||||| |
|
|
| T |
21209046 |
ccattttattgtttgaatcaaactacctccctaaaacaacctaatatactacttttgtcaaattaatttcttcga--tattttttattaattgtc |
21209138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 193
Target Start/End: Complemental strand, 193276 - 193120
Alignment:
| Q |
40 |
tctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaattctaaattgaccc---ttttattgtttaaatc |
136 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||| |||||| | ||| | |||||| ||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
193276 |
tctttttgtgtatcatacaaaaagttattttgacccttaatattaggtggataggttttacttgtaattctaaattgacccccctttagtggtttaaatc |
193177 |
T |
|
| Q |
137 |
aaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaat |
193 |
Q |
| |
|
|||| | |||||||| |||||||||||||||| ||||||| | |||||||| |||| |
|
|
| T |
193176 |
aaagaacctccccaagacaacctaatatactactttggcctaattaatttctgcaat |
193120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 4166644 - 4166785
Alignment:
| Q |
28 |
tacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaattctaaattgaccc-ttttat |
126 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| || || ||||||||| | || ||||||| ||||||||| |||| |||||||||||| |||| | |
|
|
| T |
4166644 |
tacacaaccaactctttttgggtaccatacaattttctttttcaacctttaacaacaggtgaaccggttttatgtctaatactaaattgaccctttttgt |
4166743 |
T |
|
| Q |
127 |
tgtttaaatcaaagtatctccccaaaacaacctaatatacta |
168 |
Q |
| |
|
|||||||| ||| || |||| ||||||||| |||||||||| |
|
|
| T |
4166744 |
tgtttaaactaaaatacctcctcaaaacaacataatatacta |
4166785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 4207318 - 4207459
Alignment:
| Q |
28 |
tacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaattctaaattgaccc-ttttat |
126 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| || || ||||||||| | || ||||||| ||||||||| |||| |||||||||||| |||| | |
|
|
| T |
4207318 |
tacacaaccaactctttttgggtaccatacaattttctttttcaacctttaacaacaggtgaaccggttttatgtctaatactaaattgaccctttttgt |
4207417 |
T |
|
| Q |
127 |
tgtttaaatcaaagtatctccccaaaacaacctaatatacta |
168 |
Q |
| |
|
|||||||| ||| || |||| ||||||||| |||||||||| |
|
|
| T |
4207418 |
tgtttaaactaaaatacctcctcaaaacaacataatatacta |
4207459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 36688946 - 36688847
Alignment:
| Q |
126 |
ttgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataatttcttcaatgtattttttattaattgtctggaaatcattta |
225 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||| |||||||| |||| | | ||||||||||||||| ||||||||||| |
|
|
| T |
36688946 |
ttgtttaaatcaaagtacctccc-aaaacaacccaatatactattttggtcaaattaatttctccaatatttcttttattaattgtctagaaatcattta |
36688848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 41864476 - 41864553
Alignment:
| Q |
40 |
tctttttgtgtaccatacaaaaagtttcttt-aacctttaatagcaagtgaaccagttttatgtgtaattctaaattg |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| |||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
41864476 |
tctttttgtgtaccatacaaaaagttttttttaacctttagcagcaggtgaatcagttttaagtgtaattctaaattg |
41864553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 41864566 - 41864685
Alignment:
| Q |
86 |
gtgaaccagttttatgtgtaattctaaatt-gacccttttattgtttaaatcaaagtatctccccaaaacaacctaatatactattttggccaacataat |
184 |
Q |
| |
|
||||| |||||||| ||||||||||||||| | ||| || |||||||| |||||||| ||||| ||||||||| ||||| |||||| |||| |||| |
|
|
| T |
41864566 |
gtgaatcagttttaagtgtaattctaaattggccccaattgttgtttaattcaaagtacctccctaaaacaacccaatattatattttaaccaaattaat |
41864665 |
T |
|
| Q |
185 |
ttcttcaatgtattttttat |
204 |
Q |
| |
|
|||| |||| |||||||||| |
|
|
| T |
41864666 |
ttctccaatatattttttat |
41864685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 41865652 - 41865610
Alignment:
| Q |
20 |
atttaacctacacaagtaactctttttgtgtaccatacaaaaa |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
41865652 |
atttaacctacacaagtaactctttttgtgtatcatactaaaa |
41865610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 62562 - 62421
Alignment:
| Q |
28 |
tacacaagtaactctttttgtgtaccatacaaaaagtttctttaacctttaatagcaagtgaaccagttttatgtgtaattctaaattga-cccttttat |
126 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| ||||||| || ||| | ||||| ||||| ||||||||| || ||| ||||||| | |
|
|
| T |
62562 |
tacacaaggcactctttttgtgtatcatacaaaaagtttgtttaacccttgatattagatgaacatattttacttgtaattcttaaatgaccccttttgt |
62463 |
T |
|
| Q |
127 |
tgtttaaatcaaagtatctccccaaaacaacctaatatacta |
168 |
Q |
| |
|
|||||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
62462 |
agtttaaatgaaaaaacctccccaaaacaacctaatatacta |
62421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 9440491 - 9440452
Alignment:
| Q |
19 |
catttaacctacacaagtaactctttttgtgtaccataca |
58 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
9440491 |
catttaacatacacaagtaactctttttgtgtatcataca |
9440452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University