View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11398_low_3 (Length: 404)

Name: NF11398_low_3
Description: NF11398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11398_low_3
NF11398_low_3
[»] scaffold0053 (1 HSPs)
scaffold0053 (15-397)||(79414-79798)
[»] chr7 (20 HSPs)
chr7 (15-397)||(16090822-16091206)
chr7 (15-397)||(29181033-29181417)
chr7 (33-397)||(20906386-20906749)
chr7 (222-397)||(2971209-2971384)
chr7 (24-228)||(2966721-2966926)
chr7 (22-382)||(2465118-2465474)
chr7 (18-382)||(3857308-3857669)
chr7 (263-397)||(14319554-14319688)
chr7 (263-397)||(14230777-14230911)
chr7 (309-392)||(14567246-14567329)
chr7 (269-336)||(31155396-31155463)
chr7 (267-321)||(11382871-11382925)
chr7 (267-321)||(11389348-11389402)
chr7 (267-329)||(21230952-21231014)
chr7 (267-322)||(14422985-14423040)
chr7 (248-321)||(13679474-13679548)
chr7 (267-321)||(16009577-16009631)
chr7 (270-322)||(12590643-12590695)
chr7 (270-322)||(13007435-13007487)
chr7 (267-323)||(20311050-20311106)
[»] chr3 (19 HSPs)
chr3 (15-397)||(14865593-14865976)
chr3 (22-392)||(12033375-12033745)
chr3 (33-397)||(17131497-17131862)
chr3 (22-391)||(19235002-19235369)
chr3 (267-392)||(23370435-23370560)
chr3 (183-397)||(51301506-51301720)
chr3 (191-379)||(13323732-13323920)
chr3 (261-379)||(13302185-13302301)
chr3 (261-379)||(13312841-13312957)
chr3 (263-336)||(10389429-10389502)
chr3 (263-336)||(10414518-10414591)
chr3 (263-336)||(10421188-10421261)
chr3 (270-363)||(24933787-24933880)
chr3 (309-397)||(10555353-10555439)
chr3 (267-321)||(9534328-9534382)
chr3 (267-321)||(18929246-18929300)
chr3 (267-319)||(20247791-20247843)
chr3 (267-319)||(24192957-24193009)
chr3 (270-322)||(41455097-41455149)
[»] chr4 (6 HSPs)
chr4 (15-360)||(16146791-16147138)
chr4 (264-329)||(27906263-27906328)
chr4 (211-319)||(14486604-14486713)
chr4 (270-397)||(53483708-53483836)
chr4 (267-323)||(15408140-15408196)
chr4 (145-213)||(27906142-27906210)
[»] scaffold0072 (1 HSPs)
scaffold0072 (40-397)||(49894-50254)
[»] chr1 (8 HSPs)
chr1 (33-397)||(21710584-21710948)
chr1 (33-397)||(20851057-20851422)
chr1 (33-397)||(20857684-20858049)
chr1 (33-397)||(21706041-21706406)
chr1 (269-363)||(20044910-20045004)
chr1 (183-321)||(32651488-32651627)
chr1 (267-321)||(20437024-20437078)
chr1 (270-322)||(41112038-41112090)
[»] chr8 (9 HSPs)
chr8 (33-397)||(24320595-24320960)
chr8 (90-321)||(29643386-29643619)
chr8 (267-397)||(44477623-44477754)
chr8 (267-397)||(44492781-44492912)
chr8 (236-321)||(18614240-18614327)
chr8 (267-329)||(14056556-14056618)
chr8 (267-321)||(23482053-23482107)
chr8 (267-319)||(8727735-8727787)
chr8 (267-323)||(25111977-25112033)
[»] scaffold0023 (1 HSPs)
scaffold0023 (36-397)||(135208-135568)
[»] chr5 (22 HSPs)
chr5 (33-397)||(19236666-19237030)
chr5 (33-397)||(22460921-22461286)
chr5 (33-397)||(22467545-22467910)
chr5 (15-391)||(20772718-20773090)
chr5 (15-391)||(20781493-20781865)
chr5 (22-391)||(24929862-24930229)
chr5 (15-397)||(28895967-28896347)
chr5 (15-397)||(28909215-28909595)
chr5 (15-397)||(28924793-28925173)
chr5 (15-397)||(28945610-28945990)
chr5 (15-397)||(28889263-28889643)
chr5 (15-330)||(20819968-20820279)
chr5 (15-330)||(20827068-20827379)
chr5 (15-242)||(28931061-28931287)
chr5 (267-387)||(38144472-38144591)
chr5 (263-329)||(34830081-34830146)
chr5 (183-321)||(18407944-18408084)
chr5 (267-323)||(22438746-22438802)
chr5 (267-321)||(19512387-19512441)
chr5 (267-321)||(23111200-23111254)
chr5 (267-321)||(28370055-28370109)
chr5 (270-322)||(23528634-23528686)
[»] chr2 (16 HSPs)
chr2 (33-369)||(10342-10679)
chr2 (83-371)||(25180880-25181169)
chr2 (263-397)||(27207644-27207778)
chr2 (263-397)||(26885179-26885312)
chr2 (269-397)||(23168224-23168351)
chr2 (269-397)||(23579481-23579608)
chr2 (304-397)||(27366472-27366566)
chr2 (270-397)||(5705947-5706075)
chr2 (267-321)||(6483718-6483772)
chr2 (267-321)||(6487185-6487239)
chr2 (267-321)||(21908360-21908414)
chr2 (267-321)||(23265143-23265197)
chr2 (267-321)||(23280211-23280265)
chr2 (145-213)||(23168412-23168480)
chr2 (145-213)||(23579669-23579737)
chr2 (270-322)||(26583830-26583882)
[»] chr6 (23 HSPs)
chr6 (33-397)||(20007872-20008237)
chr6 (22-391)||(9099005-9099372)
chr6 (38-382)||(21364423-21364763)
chr6 (38-382)||(23968405-23968745)
chr6 (263-392)||(31252419-31252549)
chr6 (40-191)||(29097637-29097789)
chr6 (269-397)||(11288596-11288721)
chr6 (269-336)||(15458492-15458559)
chr6 (269-336)||(15465087-15465154)
chr6 (294-397)||(28288437-28288537)
chr6 (267-397)||(34639910-34640041)
chr6 (267-397)||(34646584-34646715)
chr6 (304-397)||(24563475-24563569)
chr6 (267-329)||(10986173-10986235)
chr6 (360-397)||(24641607-24641644)
chr6 (267-322)||(29614146-29614201)
chr6 (267-321)||(4477858-4477912)
chr6 (267-321)||(23839199-23839253)
chr6 (267-329)||(24512836-24512898)
chr6 (270-322)||(12168366-12168418)
chr6 (270-322)||(19287275-19287327)
chr6 (270-322)||(19785869-19785921)
chr6 (270-322)||(19878459-19878511)
[»] scaffold0131 (1 HSPs)
scaffold0131 (15-397)||(747-1126)
[»] scaffold1318 (1 HSPs)
scaffold1318 (173-397)||(1837-2062)
[»] scaffold0348 (1 HSPs)
scaffold0348 (39-327)||(9108-9396)
[»] scaffold0384 (1 HSPs)
scaffold0384 (15-363)||(16023-16370)
[»] scaffold1469 (1 HSPs)
scaffold1469 (39-336)||(1129-1424)
[»] scaffold0029 (3 HSPs)
scaffold0029 (26-382)||(91144-91499)
scaffold0029 (26-382)||(96870-97225)
scaffold0029 (269-322)||(111885-111938)
[»] scaffold0127 (1 HSPs)
scaffold0127 (250-392)||(10222-10364)
[»] scaffold0001 (1 HSPs)
scaffold0001 (263-397)||(492953-493086)
[»] scaffold0553 (2 HSPs)
scaffold0553 (267-392)||(10125-10250)
scaffold0553 (294-363)||(11042-11111)
[»] scaffold0544 (1 HSPs)
scaffold0544 (267-392)||(1455-1580)
[»] scaffold0720 (1 HSPs)
scaffold0720 (263-397)||(3327-3461)
[»] scaffold0609 (1 HSPs)
scaffold0609 (263-397)||(5781-5916)
[»] scaffold0183 (1 HSPs)
scaffold0183 (269-391)||(6-125)
[»] scaffold0099 (1 HSPs)
scaffold0099 (70-320)||(12753-13019)
[»] scaffold0249 (1 HSPs)
scaffold0249 (269-336)||(13880-13947)
[»] scaffold0026 (2 HSPs)
scaffold0026 (267-397)||(111686-111817)
scaffold0026 (267-322)||(11850-11905)
[»] scaffold0261 (2 HSPs)
scaffold0261 (263-329)||(23562-23628)
scaffold0261 (145-213)||(23680-23748)
[»] scaffold0453 (1 HSPs)
scaffold0453 (263-326)||(10546-10609)
[»] scaffold0034 (1 HSPs)
scaffold0034 (263-329)||(73281-73347)
[»] scaffold2054 (1 HSPs)
scaffold2054 (269-322)||(717-770)
[»] scaffold1461 (1 HSPs)
scaffold1461 (263-321)||(1485-1543)
[»] scaffold0129 (1 HSPs)
scaffold0129 (270-397)||(45198-45326)
[»] scaffold0107 (1 HSPs)
scaffold0107 (267-329)||(40524-40586)
[»] scaffold0235 (1 HSPs)
scaffold0235 (268-379)||(22536-22646)
[»] scaffold0019 (1 HSPs)
scaffold0019 (267-323)||(135474-135530)
[»] scaffold0924 (1 HSPs)
scaffold0924 (267-322)||(750-805)
[»] scaffold0247 (1 HSPs)
scaffold0247 (267-322)||(11342-11397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (267-322)||(30858-30913)
[»] scaffold0317 (1 HSPs)
scaffold0317 (248-321)||(1367-1441)
[»] scaffold0222 (1 HSPs)
scaffold0222 (267-321)||(16821-16875)
[»] scaffold0004 (1 HSPs)
scaffold0004 (267-321)||(116897-116951)
[»] scaffold0085 (1 HSPs)
scaffold0085 (33-74)||(3921-3962)
[»] scaffold0310 (1 HSPs)
scaffold0310 (267-323)||(17644-17700)
[»] scaffold0025 (1 HSPs)
scaffold0025 (267-319)||(14398-14450)


Alignment Details
Target: scaffold0053 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 79798 - 79414
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 114  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  79798 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc 79699  T
Q  115 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  79698 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaa 79599  T
Q  214 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  79598 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 79499  T
Q  314 ttaccttagaattgcaaagacaattagcacagc-aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  79498 ttaccttagaattgcaaagacaaatagcacagcaaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 79414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 397
Target Start/End: Original strand, 16090822 - 16091206
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 114  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16090822 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 16090921  T
Q  115 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16090922 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaa 16091021  T
Q  214 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 313  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16091022 tcatcattaacccttattttcccaattttaccttaggaacagtttaattgattaactttcagaaattacatattatgactattgaaagataatcccaccc 16091121  T
Q  314 ttaccttagaattgcaaagacaattagcacagc-aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16091122 ttaccttagaattgcaaagacaaatagcacagcaaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 16091206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 29181417 - 29181033
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 114  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29181417 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc 29181318  T
Q  115 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  29181317 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataagcctgattcttacaccttttctttcaaaa 29181218  T
Q  214 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 313  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29181217 tcatcattaacccttattttccaaattttaccttaagaatagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 29181118  T
Q  314 ttaccttagaattgcaaagacaattagcacagc-aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29181117 ttaccttagaattgcaaagacaaatagcacagcaaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 29181033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 33 - 397
Target Start/End: Complemental strand, 20906749 - 20906386
Alignment:
Q  33 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 132  Q
    ||||||||||||| |||| |||||||||||| |||||||||| | || ||||||  || ||||||||||||||||||||||||||||||||||||||||     
T  20906749 aactaaacatcaacaacaacaattcagcccattcaagcattcttacaaaacttctcaa-ttcatccatcatattctattttcatttcaattacgatcaac 20906651  T
Q  133 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 231  Q
    ||||||||||| ||||||||||||||||||| |||  || ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||| |    
T  20906650 atcaacaacatagattaagaaatcatactaaacatcaaagtacaacattataaacttgattcttataccttttctttcaaaatcatcattaacccttaat 20906551  T
Q  232 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 331  Q
    | ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  20906550 t-cccaattttaccttaagaatagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaag 20906452  T
Q  332 gacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  20906451 gacaaatagctcagcaaatccgttcctaagttcttctctcttggtcttctccccttgccttagctt 20906386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 222 - 397
Target Start/End: Original strand, 2971209 - 2971384
Alignment:
Q  222 aacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  2971209 aacccttatcttcccaattttaccttaagaacagttcaattgattaattttcagaaattataaattatgactattgaaagataatcccacccttacctta 2971308  T
Q  322 gaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2971309 gaattgcaaagacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 2971384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 2966721 - 2966926
Alignment:
Q  24 aggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaatt 123  Q
    |||||||| ||||||||||||| |||| |||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||    
T  2966721 aggaacagaaactaaacatcaacaacaacaattcagcccattcaagcattcatacaaaacttccaaaattcatccatcatattctattttcattccaatt 2966820  T
Q  124 acgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcatta 222  Q
    |||||||| |||||||||||||||||||||||||||||||||||  || |||||||||| |||||||||||||| |||||||||||| ||| ||||||||    
T  2966821 acgatcaacatcaacaacatggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaaacatcatta 2966920  T
Q  223 accctt 228  Q
    ||||||    
T  2966921 accctt 2966926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 22 - 382
Target Start/End: Original strand, 2465118 - 2465474
Alignment:
Q  22 aaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttca 120  Q
    ||||||||| ||| | |||||||| |||| |||||||  | |||||| |||||||||||||||| ||||| ||||||||| ||||||||  |||||  ||    
T  2465118 aaaggaacaacaattcaacatcaacaacaacaattcattcaaatcaa-cattcattcagaactttcaaaacttcatccattatattctaccttcatc-ca 2465215  T
Q  121 attacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcat 220  Q
    |||| |||||| |||||||| |  || || ||||||||| ||||||| |||||| |||||||||||||| | |||||||| |||||||  ||||   |||    
T  2465216 attatgatcaacatcaacaatacagagtaggaaatcatattaatcat-caaatataacattataaacctaaatcttacacattttcttcaaaattgccat 2465314  T
Q  221 taacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttacctt 320  Q
    ||||||| |||| || | ||||||| ||| ||||||| ||||| ||||||||||||||| | ||||||| | ||||||| ||| ||||||||||||||||    
T  2465315 taaccctaatttcccaatttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaggatgatcccacccttacctt 2465414  T
Q  321 agaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctc 382  Q
    ||||||||||||| ||  ||  ||||||| || || ||||| ||||||||||||||||||||    
T  2465415 agaattgcaaagataa--agtgcagcaaaccaatttctaagctcttctctcttggtcttctc 2465474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 3857669 - 3857308
Alignment:
Q  18 atcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcat 116  Q
    |||||||| | |||||| | | |||||| |||| |||||||  | |||||| |||||||||||||||| ||||| |||||| || ||||||||  |||||    
T  3857669 atcaaaagaaccagcaattcagcatcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatctattatattctaccttcat 3857570  T
Q  117 ttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatca 216  Q
      ||||||  ||||| |||||||| |  || || ||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||||||  ||||      
T  3857569 c-caattataatcaacatcaacaatacagagtaggaaatcatattaatcat-caaatacaacattataaacctaaatcttacacattttcttcaaaattg 3857472  T
Q  217 tcattaacccttattttcccaatttt---accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 313  Q
     |||||||||| |||| |||||||||   ||| ||| ||||||| ||||| ||||||||||||||| | ||||||| | ||||| ||||| |||||||||    
T  3857471 ccattaaccctaattt-cccaatttttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattg-aagatgatcccaccc 3857374  T
Q  314 ttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctc 382  Q
    ||||||||||||||| |||| ||  ||  ||||||| || || ||||| ||||||||||||||||||||    
T  3857373 ttaccttagaattgc-aagataa--agtgcagcaaaccaatttctaagctcttctctcttggtcttctc 3857308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 263 - 397
Target Start/End: Complemental strand, 14319688 - 14319554
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagt 362  Q
    ||||||||||||||||||| | ||||  |  |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  14319688 gattaattttcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatccgttcctaagt 14319589  T
Q  363 tcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||| |||||||||||||||||| ||||    
T  14319588 tcttctctcttagtcttctctccttgccttagctt 14319554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 263 - 397
Target Start/End: Original strand, 14230777 - 14230911
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagt 362  Q
    ||||||||||||||||||| | ||||     |||||||||||||||||||||||||||||||||||||||||||  |||||  |||||| ||||||||||    
T  14230777 gattaattttcagaaattatacattaaattcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacgacaaatccgttcctaagt 14230876  T
Q  363 tcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||| |||||||||||||||||||||||||| ||||    
T  14230877 tctcctctcttggtcttctctccttgccttagctt 14230911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 309 - 392
Target Start/End: Original strand, 14567246 - 14567329
Alignment:
Q  309 cacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 392  Q
    ||||||||||||||||||| | ||||||  ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  14567246 cacccttaccttagaattgtagagacaaaaagcacagcaaatccgttcctaagttcttctctcttggtcttttctccttgcctt 14567329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 31155396 - 31155463
Alignment:
Q  269 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 336  Q
    ||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  31155396 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaa 31155463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 11382925 - 11382871
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| ||||||||| |||||| ||||| || |||||||||||||    
T  11382925 aattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 11389402 - 11389348
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| ||||||||| |||||| ||||| || |||||||||||||    
T  11389402 aattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 21231014 - 21230952
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 329  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || ||||||||||||||| |||||    
T  21231014 aattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgca 21230952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 14422985 - 14423040
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  14422985 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 14423040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 13679474 - 13679548
Alignment:
Q  248 aagaacagtttaatt-gattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||| ||||||| ||| |||||||| |||||| |||| ||||  ||||||||||| || |||||||||||||    
T  13679474 aagaacaatttaattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 16009577 - 16009631
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  16009577 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 12590695 - 12590643
Alignment:
Q  270 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  12590695 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 12590643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 13007435 - 13007487
Alignment:
Q  270 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  13007435 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 13007487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 20311106 - 20311050
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 323  Q
    ||||||||||||||| |  |||||| |||||| ||||| || |||||||||||||||    
T  20311106 aattttcagaaattatacgttatgattattgagagatagtctcacccttaccttaga 20311050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 397
Target Start/End: Original strand, 14865593 - 14865976
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 114  Q
    |||||||| ||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14865593 gacatcaacaggaacaacaactaaacatcaacaacaacaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc 14865692  T
Q  115 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa- 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||     
T  14865693 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcatccaagtacaacattataaacctgcttcttacaccttttctttcaaaa 14865792  T
Q  214 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 313  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14865793 tcatcattaaccattattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 14865892  T
Q  314 ttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14865893 ttaccttagaattgcaaagacaaatagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 14865976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 22 - 392
Target Start/End: Complemental strand, 12033745 - 12033375
Alignment:
Q  22 aaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaa 121  Q
    |||||||||| ||||||||||||| |||| |||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |||||    
T  12033745 aaaggaacagaaactaaacatcaacaacaacaattcagcccattcaagcattcatacaaaacttccaaaattcatccatcatattctattttcaattcaa 12033646  T
Q  122 ttacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcat 220  Q
    |||||||||| ||||||||||| ||||||||||||||||||| |||  || ||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  12033645 ttacgatcaacatcaacaacatagattaagaaatcatactaaacatcaaagtacaacattataaacctgattcttataccttttctttcaaaatcatcat 12033546  T
Q  221 taacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttacctt 320  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12033545 taacccttaatttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttacctt 12033446  T
Q  321 agaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctt 392  Q
    ||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  12033445 agaattgcaaagacaa-aagcacatcaaatcagttcctaagttcttctctcttggtcttctctccttacctt 12033375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 33 - 397
Target Start/End: Original strand, 17131497 - 17131862
Alignment:
Q  33 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 132  Q
    ||||||||||||| |||| ||||||||| || | |||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||| |||||     
T  17131497 aactaaacatcaacaacaacaattcagctcatttaagcattcatgcaaagcttccaaaattcatccatcatattctattttcattccaattacaatcaac 17131596  T
Q  133 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 231  Q
    ||||||||||| ||||||||||||||||||| |||  || |||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||| | |    
T  17131597 atcaacaacatagattaagaaatcatactaaacatcaaagtacaacattataaacctgatccttataccttttctttcaaaatcatccttaaccctaaat 17131696  T
Q  232 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 331  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17131697 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 17131796  T
Q  332 gacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17131797 gacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 17131862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 22 - 391
Target Start/End: Complemental strand, 19235369 - 19235002
Alignment:
Q  22 aaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaa 121  Q
    |||| |||||||| | | |||||| |||| ||||| |  |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||    
T  19235369 aaagaaacagcaaattagcatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaattcatctatcatattctattttcactccaa 19235270  T
Q  122 -ttacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcat 220  Q
     ||| ||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||   |||||||||    
T  19235269 attatgatcaatatcaacaatatagattaggaaatcatactaatcat-caaatacaacattataaacctgattcttacacattttcttcagaatcatcat 19235171  T
Q  221 taacccttattttcccaattttaccttaagaacagtttaattgattaa-ttttcagaaattacatattatgactattgaaagataatcccacccttacct 319  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  19235170 taaccctaaatttcccaattttaccttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttacct 19235071  T
Q  320 tagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcct 391  Q
    |||||||||||||| ||  ||  |||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  19235070 tagaattgcaaagataa--agtgcagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 19235002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 267 - 392
Target Start/End: Complemental strand, 23370560 - 23370435
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttctt 366  Q
    ||||||||||||||| | ||||||| |||||| ||||| |||||||||||||||||||||| | ||||||  ||||||||||||| ||||||||||||||    
T  23370560 aattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttctt 23370461  T
Q  367 ctctcttggtcttctctccttgcctt 392  Q
    ||||||||||||||||||||||||||    
T  23370460 ctctcttggtcttctctccttgcctt 23370435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 183 - 397
Target Start/End: Original strand, 51301506 - 51301720
Alignment:
Q  183 taaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttac-cttaagaacagtttaattgattaattttcagaaatta 281  Q
    |||||||||||||| |||| |  ||||||||| | ||| |||||| |||  ||||||||||  || | ||||| || |||||||||||||||||||||||    
T  51301506 taaacctgattcttgcaccatccctttcaaattagcatcaaccctaatt--cccaattttattctcatgaacaattcaattgattaattttcagaaatta 51301603  T
Q  282 catattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttcttctctcttggtctt 379  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||| |||||||    | |||||| ||||  |||   ||||||||||||||||||||    
T  51301604 catattatgattattggaagataatctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttcttctctcttggtctt 51301702  T
Q  380 ctctccttgcctttgctt 397  Q
    ||||||||||||| ||||    
T  51301703 ctctccttgccttagctt 51301720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 191 - 379
Target Start/End: Complemental strand, 13323920 - 13323732
Alignment:
Q  191 attcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttacctt-aagaacagtttaatt-gattaattttcagaaattacatatt 287  Q
    ||||||||||| || ||||| || ||||||| |||||| | || |||||||||| ||| ||||||| | ||||| |||||||||||||||||||||||||    
T  13323920 attcttacaccattcctttcgaagtcatcatcaaccctaaatt-cccaattttatcttcaagaacaatctaatttgattaattttcagaaattacatatt 13323822  T
Q  288 atgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtctt 379  Q
    |||| ||||||||||||||| |||||||||||||||||||   ||| ||  |   ||||||||||||||||| ||||||||| |||| ||||    
T  13323821 atgattattgaaagataatctcacccttaccttagaattg--tagaaaaaaaaatcagcaaatcagttcctaggttcttctcccttgttctt 13323732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 261 - 379
Target Start/End: Complemental strand, 13302301 - 13302185
Alignment:
Q  261 ttgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaa 360  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||   ||| ||  | |||||||||||||||||||     
T  13302301 ttgattaattttcagaaattacatattatgattattgaaagataatctcacccttaccttagaattg--tagaaaaaaaacacagcaaatcagttcctag 13302204  T
Q  361 gttcttctctcttggtctt 379  Q
    |||| |||| |||| ||||    
T  13302203 gttcatctcccttgttctt 13302185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 261 - 379
Target Start/End: Complemental strand, 13312957 - 13312841
Alignment:
Q  261 ttgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaa 360  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||   ||| ||  | |||||||||||||||||||     
T  13312957 ttgattaattttcaaaaattacatattatgattattgaaagataatctcacccttaccttagaattg--tagaaaaaaaacacagcaaatcagttcctag 13312860  T
Q  361 gttcttctctcttggtctt 379  Q
    |||| |||| |||| ||||    
T  13312859 gttcatctcccttgttctt 13312841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 336
Target Start/End: Complemental strand, 10389502 - 10389429
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 336  Q
    ||||| ||||||||||||| | ||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  10389502 gattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaa 10389429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 336
Target Start/End: Complemental strand, 10414591 - 10414518
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 336  Q
    ||||| ||||||||||||| | ||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  10414591 gattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaa 10414518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 336
Target Start/End: Complemental strand, 10421261 - 10421188
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 336  Q
    ||||| ||||||||||||| | ||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  10421261 gattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttagaattgcaaagacaa 10421188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 363
Target Start/End: Complemental strand, 24933880 - 24933787
Alignment:
Q  270 tttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagtt 363  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||||||| |   | ||||| ||| ||||||||| |||||||||    
T  24933880 tttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgtaggaagaattaacaccgcaaatcagctcctaagtt 24933787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 397
Target Start/End: Original strand, 10555353 - 10555439
Alignment:
Q  309 cacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||| ||| ||||  || ||  ||||||| | |||||| |||||||||||||||||||| ||||||||| ||||    
T  10555353 cacccttaccttagaattgtaaacacaaa-agtacgacaaatcaatccctaagctcttctctcttggtcttctc-ccttgccttagctt 10555439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 9534328 - 9534382
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  9534328 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 18929246 - 18929300
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| |||| |||| |||||| ||||| || |||||||||||||    
T  18929246 aattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 20247843 - 20247791
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacct 319  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||    
T  20247843 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 24192957 - 24193009
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacct 319  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||    
T  24192957 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 41455149 - 41455097
Alignment:
Q  270 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  41455149 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 41455097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 360
Target Start/End: Complemental strand, 16147138 - 16146791
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 114  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16147138 gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc 16147039  T
Q  115 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16147038 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaa 16146939  T
Q  214 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 313  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16146938 tcatcattaacccttattttccaaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 16146839  T
Q  314 ttaccttagaattgcaaagacaattagcacagc-aaatcagttcctaa 360  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  16146838 ttaccttagaattgcaaagacaaatagcacagcaaaatcagttcctaa 16146791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 27906263 - 27906328
Alignment:
Q  264 attaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 329  Q
    |||||||||||||||||| | |||||||  ||||||||||||||||||||||| ||||||||||||    
T  27906263 attaattttcagaaattatacattatgatcattgaaagataatcccacccttatcttagaattgca 27906328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 14486604 - 14486713
Alignment:
Q  211 aaatcatcattaacccttattttcccaattttacctt-aagaacagtttaatt-gattaattttcagaaattacatattatgactattgaaagataatcc 308  Q
    |||||||||| |||||| || |||||||||||| ||| ||||||| || |||| ||||||||||||||||||| |||||||||  |||||| |||| ||     
T  14486604 aaatcatcatcaaccct-atattcccaattttatcttcaagaacaattcaattcgattaattttcagaaattatatattatgatcattgaaggatagtct 14486702  T
Q  309 cacccttacct 319  Q
    |||||||||||    
T  14486703 cacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 397
Target Start/End: Original strand, 53483708 - 53483836
Alignment:
Q  270 tttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttcttc 367  Q
    |||||| ||||| | ||||||| |||||| ||||| || |||||||||||||||||||| |||||||    | |||||| ||||  |||   ||||||||    
T  53483708 tttcaggaattatagattatgattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttcttc 53483806  T
Q  368 tctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||| ||||| ||||    
T  53483807 tctcttggtcttctctcctagccttagctt 53483836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 15408140 - 15408196
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 323  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||||    
T  15408140 aattttcagaaattatatactatgattattgagagatagtctcacccttaccttaga 15408196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 27906142 - 27906210
Alignment:
Q  145 gattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 213  Q
    ||||||||||||||||  | |||  || |||||||   ||||| |||||||||||||||||||||||||    
T  27906142 gattaagaaatcatacggaacatcaaattacaacacattaaacatgattcttacaccttttctttcaaa 27906210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 40 - 397
Target Start/End: Complemental strand, 50254 - 49894
Alignment:
Q  40 catcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaaca 139  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50254 catcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaaca 50155  T
Q  140 acatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcattaacccttattttcccaa 238  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50154 acatggattaagaaatcatactaatctttcaaatataacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaa 50055  T
Q  239 -ttttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaat 337  Q
     |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  50054 tttttaccttaagaacagtttaattgattaatttttagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaa 49955  T
Q  338 tagcacagc-aaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||| | |||||||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  49954 tagcacaacaaaatcagttcctaagttcttctctcttggttttctctctttgccttagctt 49894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 33 - 397
Target Start/End: Original strand, 21710584 - 21710948
Alignment:
Q  33 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 132  Q
    ||||||||||||| |||| |||||||||||| |||||||||||| || | ||||||||||||||||||||||||||||||||||| |||||| ||||||     
T  21710584 aactaaacatcaacaacaacaattcagcccattcaagcattcatacaaagcttccaaaattcatccatcatattctattttcattccaattatgatcaac 21710683  T
Q  133 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 231  Q
    ||||||||||| ||||||| ||||||||||| ||| ||| || ||||||||||||||||| |||| || |||||||||||| ||||| | |||||| | |    
T  21710684 atcaacaacatagattaaggaatcatactaaacat-caagtataacattataaacctgatccttatactttttctttcaaaatcatcttaaaccctaaat 21710782  T
Q  232 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 331  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21710783 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 21710882  T
Q  332 gacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21710883 gacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 21710948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 33 - 397
Target Start/End: Complemental strand, 20851422 - 20851057
Alignment:
Q  33 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 132  Q
    ||||||||||||| |||||||||||    || |||||||||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||      
T  20851422 aactaaacatcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagc 20851323  T
Q  133 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 231  Q
    ||||||||||| ||||||||||||||||||| |||  || ||||||| |||||||||||| |||| ||||||||||||||| ||||| |||||||| | |    
T  20851322 atcaacaacatagattaagaaatcatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaat 20851223  T
Q  232 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 331  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20851222 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 20851123  T
Q  332 gacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20851122 gacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 20851057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 33 - 397
Target Start/End: Complemental strand, 20858049 - 20857684
Alignment:
Q  33 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 132  Q
    ||||||||||||| |||||||||||    || |||||||||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||      
T  20858049 aactaaacatcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagc 20857950  T
Q  133 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 231  Q
    ||||||||||| |||||||||| |||||||| |||  || ||||||| |||||||||||| |||| ||||||||||||||| ||||| |||||||| | |    
T  20857949 atcaacaacatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaat 20857850  T
Q  232 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 331  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20857849 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 20857750  T
Q  332 gacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20857749 gacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 20857684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 33 - 397
Target Start/End: Original strand, 21706041 - 21706406
Alignment:
Q  33 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 132  Q
    ||||||||||||| |||||||||||    || |||||||||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||      
T  21706041 aactaaacatcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagc 21706140  T
Q  133 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 231  Q
    ||||||||||| |||||||||| |||||||| |||  || ||||||| |||||||||||| |||| ||||||||||||||| ||||| |||||||| | |    
T  21706141 atcaacaacatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaat 21706240  T
Q  232 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 331  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21706241 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 21706340  T
Q  332 gacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21706341 gacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 21706406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 363
Target Start/End: Complemental strand, 20045004 - 20044910
Alignment:
Q  269 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagtt 363  Q
    ||||||||| ||| |||||| ||  |||||| ||||||||||||||||||||||||||| |   | ||||| ||||||||||||| |||||||||    
T  20045004 ttttcagaatttatatattaagatcattgaaggataatcccacccttaccttagaattgtaggaagaattaacacagcaaatcagctcctaagtt 20044910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 321
Target Start/End: Original strand, 32651488 - 32651627
Alignment:
Q  183 taaacctgattcttacaccttttctttcaaatcatcattaacccttattttcccaattttacctt--aagaacagtttaatt-gattaattttcagaaat 279  Q
    ||||| ||||||||||||| |  ||||||||||| ||| |||||| |||  |||||||||   ||  |||||||  | |||| ||| |||||||||||||    
T  32651488 taaacatgattcttacaccatccctttcaaatcagcatcaaccctaatt--cccaatttttattttcaagaacaactcaattagatcaattttcagaaat 32651585  T
Q  280 tacatattatgactattgaaagataatcccacccttacctta 321  Q
    || ||| ||||| |||||| ||||| || |||||||||||||    
T  32651586 tatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 20437078 - 20437024
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  20437078 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 41112038 - 41112090
Alignment:
Q  270 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  41112038 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 41112090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 33 - 397
Target Start/End: Complemental strand, 24320960 - 24320595
Alignment:
Q  33 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 132  Q
    ||||||||||||| |||||||||||    || |||||||||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||      
T  24320960 aactaaacatcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagc 24320861  T
Q  133 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 231  Q
    ||||||||||| ||||||||||||||||||| |||  || ||||||| |||||||||||| | || ||||||||||||||| ||||| |||||||| | |    
T  24320860 atcaacaacatagattaagaaatcatactaaacatcaaagtacaacaatataaacctgatccctataccttttctttcaaaatcatccttaaccctaaat 24320761  T
Q  232 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 331  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24320760 ttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 24320661  T
Q  332 gacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24320660 gacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 24320595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 90 - 321
Target Start/End: Complemental strand, 29643619 - 29643386
Alignment:
Q  90 aattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacct 189  Q
    |||||||||| ||||||||||||||||| |||||  |||||  |||||||  || ||||||||||||||||| | ||   || |||||||  || ||||     
T  29643619 aattcatccaacatattctattttcattccaattctgatcacaatcaacattatagattaagaaatcatactgaacaccaaattacaacacaattaaccc 29643520  T
Q  190 gattcttacaccttttctttc-aaatcatcattaacccttattttcccaattttaccttaa-gaacagtttaatt-gattaattttcagaaattacatat 286  Q
     |||||||||||  | ||| | |||||||||| |||||||| || | |||||||| ||| | ||||| || |||| ||||||||||||||||||||||||    
T  29643519 aattcttacaccaatccttcctaaatcatcatcaacccttaatt-ctcaattttatcttcatgaacaattcaatttgattaattttcagaaattacatat 29643421  T
Q  287 tatgactattgaaagataatcccacccttacctta 321  Q
    ||||| ||||||||||||||| |||||||||||||    
T  29643420 tatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 267 - 397
Target Start/End: Original strand, 44477623 - 44477754
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttc 364  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||||||||  |||||||    | |||||| ||||  |||   |||||    
T  44477623 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgtgaagacaaagaaaacacagc-aatcgattctctagttc 44477721  T
Q  365 ttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||||| ||||    
T  44477722 ttctctcttggtcttctctccttgccttagctt 44477754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 267 - 397
Target Start/End: Original strand, 44492781 - 44492912
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttc 364  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||||||||  |||||||    | |||||| ||||  |||   |||||    
T  44492781 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgtgaagacaaagaaaacacagc-aatcgattctctagttc 44492879  T
Q  365 ttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||||| ||||    
T  44492880 ttctctcttggtcttctctccttgccttagctt 44492912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 321
Target Start/End: Original strand, 18614240 - 18614327
Alignment:
Q  236 caattttacctt-aagaacagtttaattg-attaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    |||||||| ||| ||||||| || ||||| || ||||||||||||||| |||| |||| |||||| ||||| || |||||||||||||    
T  18614240 caattttatcttcaagaacaattcaattggatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 14056618 - 14056556
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 329  Q
    ||||||||||| ||||||| ||| | |||||| ||||| || ||||||||||||||| |||||    
T  14056618 aattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgca 14056556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 23482107 - 23482053
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  23482107 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 8727787 - 8727735
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacct 319  Q
    ||||||||||||||| | ||||||| ||||||  ||||||| |||||||||||    
T  8727787 aattttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 25111977 - 25112033
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 323  Q
    ||||||||||| ||||||| ||| | |||||| ||||| || |||||||||||||||    
T  25111977 aattttcagaatttacatactattattattgagagatagtctcacccttaccttaga 25112033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 36 - 397
Target Start/End: Original strand, 135208 - 135568
Alignment:
Q  36 taaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatc 135  Q
    |||||||||| |||| |||||||||||| |||||||||||| || ||||||| || |||||||||||||||||||||||||| |||||  |||||  |||    
T  135208 taaacatcaacaacaacaattcagcccattcaagcattcatacaaaacttcccaa-ttcatccatcatattctattttcattccaattttgatcacgatc 135306  T
Q  136 aacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttc 234  Q
    |||||||| ||||||||||||||||||| |||  || |||||||  |||||||||||||||||||||||||||||||| |||||||||||||||| || |    
T  135307 aacaacatagattaagaaatcatactaa-catcaaattacaacacaataaacctgattcttacaccttttctttcaaaatcatcattaacccttaatt-c 135404  T
Q  235 ccaattttacctt-aagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaaga 333  Q
     |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  135405 tcaattttacctttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatctcacgcttaccttagaattgcaaaga 135504  T
Q  334 caattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  135505 caaatagcacagcaaatcagttcctaagctcttctctcttggtcttctctccttgccttagctt 135568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 33 - 397
Target Start/End: Original strand, 19236666 - 19237030
Alignment:
Q  33 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 132  Q
    ||||||||||||| |||||||||||    || |||||||||||| ||   |||||||||||||| ||||||| |||||||||||| ||||||||||||      
T  19236666 aactaaacatcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatactctattttcattccaattacgatcagc 19236765  T
Q  133 atcaacaacatggattaagaaatcatactaatcattcaaa-tacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttat 230  Q
    ||||||||||| |||||||||  |||||||| |  ||||| ||||||| |||||||||||| |||| ||||||||||||||| ||||| |||||||| |     
T  19236766 atcaacaacatagattaagaacacatactaaac--tcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaa 19236863  T
Q  231 tttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaa 330  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19236864 tttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaa 19236963  T
Q  331 agacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19236964 agacaaaaagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttagctt 19237030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 33 - 397
Target Start/End: Original strand, 22460921 - 22461286
Alignment:
Q  33 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 132  Q
    ||||||||||||| |||||||||||    || |||||||||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||      
T  22460921 aactaaacatcaacaacatcaattctattcattcaagcattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagc 22461020  T
Q  133 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattt 232  Q
    ||||||||||| || ||||||| |||||||| |||  || ||| ||| |||||||||||| |||| |||||||||||||||||||| |||||||| | ||    
T  22461021 atcaacaacatagaataagaaaacatactaaacatcaaagtacgacaatataaacctgatccttataccttttctttcaaatcatccttaaccctaaatt 22461120  T
Q  233 tcccaattttaccttaagaacagtttaattgattaa-ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 331  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22461121 tcccaattttaccttaagaacagttcaattgattaatttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 22461220  T
Q  332 gacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||   ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  22461221 gacaaaaggcacagcaaatcagttcttaagttcttctctcttggtcttctctccttgccttagctt 22461286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 33 - 397
Target Start/End: Original strand, 22467545 - 22467910
Alignment:
Q  33 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 132  Q
    ||||||||||||| |||||||||||    || ||||| |||||| ||   |||||||||||||| |||||||||||||||||||| ||||||||||||      
T  22467545 aactaaacatcaacaacatcaattctattcattcaagaattcatgcaaggcttccaaaattcattcatcatattctattttcattccaattacgatcagc 22467644  T
Q  133 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattt 232  Q
    ||||||||||| || ||||||| |||||||| |||  || ||| ||| |||||||||||| |||| |||||||||||||||||||| |||||||| | ||    
T  22467645 atcaacaacatagaataagaaaacatactaaacatcaaagtacgacaatataaacctgatccttataccttttctttcaaatcatccttaaccctaaatt 22467744  T
Q  233 tcccaattttaccttaagaacagtttaattgattaa-ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 331  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22467745 tcccaattttaccttaagaacagttcaattgattaatttttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattgcaaa 22467844  T
Q  332 gacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||   ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  22467845 gacaaaaggcacagcaaatcagttcttaagttcttctctcttggtcttctctccttgccttagctt 22467910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 391
Target Start/End: Original strand, 20772718 - 20773090
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctatttt 113  Q
    ||||||||||| |||| ||| | |||||||| |||| ||||| |  |||||||| |||||||||||||||||||||| ||||||||| |||||||| |||    
T  20772718 gacatcaaaagaaacaacaattcaacatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaacttcatccattatattctacttt 20772817  T
Q  114 catttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 213  Q
    |||  |||||| |||||| |||||||| || || || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||  |||    
T  20772818 catc-caattatgatcaacatcaacaatatagagtaggaaatcatactaatcat-caaatacaacattataaacctgattcttacacattttcttcaaaa 20772915  T
Q  214 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 313  Q
    |||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||||||||||||||||||    
T  20772916 tcatcattaaccctaaatttcccaattttaccttaagaacagttaaattgattaattttcagaaatcatatattataactattgaaagataatcccaccc 20773015  T
Q  314 ttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcct 391  Q
    |||||||||||||||||||| ||  || ||||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  20773016 ttaccttagaattgcaaagataa--agtacagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 20773090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 391
Target Start/End: Original strand, 20781493 - 20781865
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctatttt 113  Q
    ||||||||||| |||| ||| | |||||||| |||| ||||| |  |||||||| |||||||||||||||||||||| ||||||||| |||||||| |||    
T  20781493 gacatcaaaagaaacaacaattcaacatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaacttcatccattatattctacttt 20781592  T
Q  114 catttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 213  Q
    |||  |||||| |||||| |||||||| || || || ||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||  |||    
T  20781593 catc-caattatgatcaacatcaacaatatagagtaggaaatcataataatcat-caaatacaacattataaacctgattcttacacattttcttcaaaa 20781690  T
Q  214 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 313  Q
    |||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| | |||||||||||||||||||||    
T  20781691 tcatcattaaccctaaatttcccaattttaccttaagaacagttaaattgattaattttcagaaatcatatattataattattgaaagataatcccaccc 20781790  T
Q  314 ttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcct 391  Q
    |||||||||||||||||||| ||  || ||||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  20781791 ttaccttagaattgcaaagataa--agtacagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 20781865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 22 - 391
Target Start/End: Complemental strand, 24930229 - 24929862
Alignment:
Q  22 aaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaa 121  Q
    |||| |||||||| | | |||||| |||| ||||| |  |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| | |||    
T  24930229 aaagaaacagcaaattagcatcaacaacaacaattaactccaatcaaacattcattcagaacttccaacattcatctatcatattctattttcactccaa 24930130  T
Q  122 -ttacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcat 220  Q
     ||| ||||||||||||||  || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||   |||||||||    
T  24930129 attatgatcaatatcaacattatagattaggaaatcatactaatcat-caaatacaacattataaacctgattcttacacatttccttcagaatcatcat 24930031  T
Q  221 taacccttattttcccaattttaccttaagaacagtttaattgattaa-ttttcagaaattacatattatgactattgaaagataatcccacccttacct 319  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||| |||| |||||| | ||||||  |||||||||||||||||||||||||||||    
T  24930030 taaccctaaatttcccaattttaccttaagaacagttaaattgattaattttttagaaatcatatattagaactattgaaagataatcccacccttacct 24929931  T
Q  320 tagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcct 391  Q
    |||||||| ||||| ||  ||  |||||| ||| |||||||| |||||||||||||||||||| ||||||||    
T  24929930 tagaattgtaaagataa--agtgcagcaagtcaattcctaagctcttctctcttggtcttctc-ccttgcct 24929862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 28896347 - 28895967
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 114  Q
    |||||||| ||||||||||||||||||| || |||| |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||    
T  28896347 gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28896248  T
Q  115 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 214  Q
    ||  |||||| |||||| | || | | |  ||||| |||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||  ||||    
T  28896247 atc-caattatgatcaacaacagcgatacagattaggaaatcatactaatcatt-aaatacaacgtcataaacctgaattttacgcattttcttcaaaat 28896150  T
Q  215 catcattaacccttattttcccaatttt-accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 313  Q
    |||||| || ||| |||||||||||||| |||||||||||| || ||| | ||||||||||||||| | ||| ||| ||||||||||||| |||||||||    
T  28896149 catcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccc 28896050  T
Q  314 ttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||| | |||  |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  28896049 ttaccttagaattgcaacggcaa-aagcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28895967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 28909595 - 28909215
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 114  Q
    |||||||| ||||||| ||||||||||| || |||| |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||    
T  28909595 gacatcaacaggaacaacaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28909496  T
Q  115 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 214  Q
    ||  |||||| |||||| | || | | |  ||||| |||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||  ||||    
T  28909495 atc-caattatgatcaacaacagcgatacagattaggaaatcatactaatcatt-aaatacaacgtcataaacctgaattttacgcattttcttcaaaat 28909398  T
Q  215 catcattaacccttattttcccaatttt-accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 313  Q
    |||||| || ||| |||||||||||||| |||||||||||| || ||| | ||||||||||||||| | ||| ||| ||||||||||||| |||||||||    
T  28909397 catcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccc 28909298  T
Q  314 ttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||| |||||  |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  28909297 ttaccttagaattgcaacgacaa-aagcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28909215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 28925173 - 28924793
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 114  Q
    |||||||| ||||||||||||||||||| || |||| |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||    
T  28925173 gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28925074  T
Q  115 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 214  Q
    ||  |||||| |||||| | || | | |  ||||| |||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||  ||||    
T  28925073 atc-caattatgatcaacaacagcgatacagattaggaaatcatactaatcatt-aaatacaacgtcataaacctgaattttacgcattttcttcaaaat 28924976  T
Q  215 catcattaacccttattttcccaatttt-accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 313  Q
    |||||| || ||| |||||||||||||| |||||||||||| || ||| | ||||||||||||||| | ||| ||| ||||||||||||| |||||||||    
T  28924975 catcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccc 28924876  T
Q  314 ttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||| | |||  |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  28924875 ttaccttagaattgcaacggcaa-aagcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 28945990 - 28945610
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 114  Q
    |||||||| ||||||| ||||||||||| || |||| |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||    
T  28945990 gacatcaacaggaacaacaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28945891  T
Q  115 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 214  Q
    ||  |||||| |||||| | || | | |  ||||| |||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||  ||||    
T  28945890 atc-caattatgatcaacaacagcgatacagattaggaaatcatactaatcatt-aaatacaacgtcataaacctgaattttacgcattttcttcaaaat 28945793  T
Q  215 catcattaacccttattttcccaatttt-accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 313  Q
    |||||| || ||| |||||||||||||| |||||||||||| || ||| | ||||||||||||||| | ||| ||| ||||||||||||| |||||||||    
T  28945792 catcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccc 28945693  T
Q  314 ttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||| |||||  |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  28945692 ttaccttagaattgcaacgacaa-aagcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28945610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 28889643 - 28889263
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 114  Q
    |||||||| ||||||||||||||||||| || |||| |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||    
T  28889643 gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28889544  T
Q  115 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 214  Q
    ||  |||||| |||||| | || | | |  ||||| |||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||  ||||    
T  28889543 atc-caattatgatcaacaacagcgatacagattaggaaatcatactaatcatt-aaatacaacgtcataaacctgaattttacgcattttcttcaaaat 28889446  T
Q  215 catcattaacccttattttcccaatttt-accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc 313  Q
    |||||| || ||| |||||||||||||| |||||||||||| || ||| | ||||||||||||||| | ||| ||| ||||||||||||| |||||||||    
T  28889445 catcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccc 28889346  T
Q  314 ttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||| | |||  ||||  |||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  28889345 ttaccttagaattgcaacggcaa-aagcaatgcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 28889263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 20819968 - 20820279
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 114  Q
    |||||||| ||||||||||||||||||| || |||| ||||| ||||||||||||||||||| |||||  | | |||||||| ||| | || |||||| |    
T  20819968 gacatcaacaggaacagcaactaaacataaacaacaacaatttagcccaatcaagcattcatacagaaaattccaaattcatacataacatgctatttgc 20820067  T
Q  115 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 214  Q
    ||  |||||| ||||||   |||||| |   |||| | | ||||||| ||||| ||||||||||||||||||||||| |||||  | || ||||  ||||    
T  20820068 atc-caattatgatcaactacaacaatactaattaggga-tcatactcatcat-caaatacaacattataaacctgaatcttatgcattctcttcaaaat 20820164  T
Q  215 catcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccct 314  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||| ||||  |||||  |||||||||| ||||||  ||||||||||||| ||||||||||    
T  20820165 catcattaaccctaattttcc-aattttaccttaagaacggttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccaccct 20820263  T
Q  315 taccttagaattgcaa 330  Q
    ||||||||||||||||    
T  20820264 taccttagaattgcaa 20820279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 20827068 - 20827379
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 114  Q
    |||||||| ||||||||||||||||||| || |||| ||||| ||||||||||||||||||| |||||  | | |||||||| ||| | || |||||| |    
T  20827068 gacatcaacaggaacagcaactaaacataaacaacaacaatttagcccaatcaagcattcatacagaaaattccaaattcatacataacatgctatttgc 20827167  T
Q  115 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 214  Q
    ||  |||||| ||||||   |||||| |   |||| | | ||||||| ||||| ||||||||||||||||||||||| |||||  | || ||||  ||||    
T  20827168 atc-caattatgatcaactacaacaatactaattaggga-tcatactcatcat-caaatacaacattataaacctgaatcttatgcattctcttcaaaat 20827264  T
Q  215 catcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccct 314  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||| ||||  |||||  |||||||||| ||||||  ||||||||||||| ||||||||||    
T  20827265 catcattaaccctaattttcc-aattttaccttaagaacggttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccaccct 20827363  T
Q  315 taccttagaattgcaa 330  Q
    ||||||||||||||||    
T  20827364 taccttagaattgcaa 20827379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 28931287 - 28931061
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 114  Q
    |||||||| ||||||||||||||||||| || |||| |||| ||||||||||| |||||||| |||||  ||| |||||||| ||| | || || |||||    
T  28931287 gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc 28931188  T
Q  115 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctt-tcaaa 213  Q
    | | |||||| |||||| | || | | |  ||||| |||||||||||||||||| ||||||||| | |||||||||| | |||| | |||||||   |||    
T  28931187 a-tccaattatgatcaacaacagcgatacagattaggaaatcatactaatcatt-aaatacaacgtcataaacctgaattttacccattttcttcaaaaa 28931090  T
Q  214 tcatcattaacccttattttcccaatttt 242  Q
     |||||| || ||| ||||||||||||||    
T  28931089 ccatcatcaaacctaattttcccaatttt 28931061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 387
Target Start/End: Complemental strand, 38144591 - 38144472
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagca-aatcagttcctaagttct 365  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||  ||||| | |  |||| ||||||| |||| |||||||||||||    
T  38144591 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcaga-atgatta-cacagcacaatcggttcctaagttct 38144494  T
Q  366 tctctcttggtcttctctcctt 387  Q
    ||||||||||||||||||||||    
T  38144493 tctctcttggtcttctctcctt 38144472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 34830081 - 34830146
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 329  Q
    |||| |||||||||||||| | ||||  | |||||||||||||||||||||||||||||||||||||    
T  34830081 gattgattttcagaaattatacattaa-attattgaaagataatcccacccttaccttagaattgca 34830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 183 - 321
Target Start/End: Complemental strand, 18408084 - 18407944
Alignment:
Q  183 taaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttacctt--aagaacagtttaatt-gattaattttcagaaa 278  Q
    ||||| ||||||||||||| || |||||||| ||| ||| |||||| |||  |||||||||   ||  ||||||| || |||| ||| ||||||||||||    
T  18408084 taaacatgattcttacaccattcctttcaaaatcagcatcaaccctaatt--cccaatttttattttcaagaacaattcaattagatcaattttcagaaa 18407987  T
Q  279 ttacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||| ||||||||| |||||| ||||| || |||||||||||||    
T  18407986 ttatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 22438802 - 22438746
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 323  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||||    
T  22438802 aattttcagaaattatacattatgattattgagagatagtctcacccttaccttaga 22438746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 19512387 - 19512441
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  19512387 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 23111254 - 23111200
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  23111254 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 28370109 - 28370055
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  28370109 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 23528634 - 23528686
Alignment:
Q  270 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  23528634 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 23528686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 33 - 369
Target Start/End: Original strand, 10342 - 10679
Alignment:
Q  33 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 132  Q
    ||||||||||||| ||||||||||| |  || |||||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||||||||      
T  10342 aactaaacatcaacaacatcaattcggttcattcaagcattcatgcaaagcttccaaaattcatccatcatattctattttcattccaattacgatcagc 10441  T
Q  133 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttatt 231  Q
    ||||||||||| ||||||||||||||||||| |||  || ||||||| ||||||||| || | || ||||||||||||||| ||||| |||||||| | |    
T  10442 atcaacaacatagattaagaaatcatactaaacatcaaagtacaacaatataaaccttatccctataccttttctttcaaaatcatccttaaccctaaat 10541  T
Q  232 ttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaa 331  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10542 ttcccaattttaccttaagaacaattcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaatttcaaa 10641  T
Q  332 gacaattagcacagcaaatcagttcctaagttcttctc 369  Q
    |||||  |||||||||||||||||||||||| ||||||    
T  10642 gacaaaaagcacagcaaatcagttcctaagtccttctc 10679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 83 - 371
Target Start/End: Complemental strand, 25181169 - 25180880
Alignment:
Q  83 cttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacatta 182  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| |||  || ||||| | ||    
T  25181169 cttccaaaattcatccatcatattctattttcattccaattacgatcaacatcaacaacatagattaagaaatcatactaaacatcaaagtacaaaaata 25181070  T
Q  183 taaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaatta 281  Q
    ||||||||||   || ||||||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25181069 taaacctgatcaatataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaattttcagaaatta 25180970  T
Q  282 catattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctc 371  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  25180969 tatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatcagttcctaagttcttctctc 25180880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 263 - 397
Target Start/End: Complemental strand, 27207778 - 27207644
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagt 362  Q
    ||||||||||||||||||| | ||||  |  |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  27207778 gattaattttcagaaattatacattaaaatcattgaaagataatcccacccttaccttagaattgcaaagacaaaaagcacagcaaatccgttcctaagt 27207679  T
Q  363 tcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||||||| ||||    
T  27207678 tcttctctcttggtcttctctccttgccttagctt 27207644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 263 - 397
Target Start/End: Original strand, 26885179 - 26885312
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagt 362  Q
    ||||||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||| ||||||  |||||| |||||| ||||||||||    
T  26885179 gattaattttcagaaattatacatta-gattattgaaagataatcccacccttaccttagaattgcagagacaaaaagcacatcaaatccgttcctaagt 26885277  T
Q  363 tcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||| ||||||||||||||| ||||    
T  26885278 tcttctctcttggttttctctccttgccttagctt 26885312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 269 - 397
Target Start/End: Complemental strand, 23168351 - 23168224
Alignment:
Q  269 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttct 368  Q
    ||||||||||||| | |||||||  | |||||||||||||||||||||||||||||||||| | ||||  ||||||||||| | || |||||||||||||    
T  23168351 ttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaaacaaa-agcacagcaaaaccgtccctaagttcttct 23168253  T
Q  369 ctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||| ||||    
T  23168252 ctcttggtcttctctccttgccttagctt 23168224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 269 - 397
Target Start/End: Complemental strand, 23579608 - 23579481
Alignment:
Q  269 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttct 368  Q
    ||||||||||||| | |||||||  | |||||||||||||||||||||||||||||||||| | ||||  ||||||||||| | || |||||||||||||    
T  23579608 ttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaaacaaa-agcacagcaaaaccgtccctaagttcttct 23579510  T
Q  369 ctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||| ||||    
T  23579509 ctcttggtcttctctccttgccttagctt 23579481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 397
Target Start/End: Complemental strand, 27366566 - 27366472
Alignment:
Q  304 aatcccacccttaccttagaattgcaaagacaattag--cacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||| ||||||||||||||||||||||||||||  |   |||||||| ||  ||||  ||||||||||||||||||||||||||||||||| ||||    
T  27366566 aatctcacccttaccttagaattgcaaagacaaagaaaacacagcaa-tcgattccctagttcttctctcttggtcttctctccttgccttagctt 27366472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 397
Target Start/End: Complemental strand, 5706075 - 5705947
Alignment:
Q  270 tttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttcttc 367  Q
    |||||| ||||| | ||||||| || ||| ||||| || |||||||||||||||||||| |||||||    | |||||| ||||  |||   ||||||||    
T  5706075 tttcaggaattatagattatgattaatgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttcttc 5705977  T
Q  368 tctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||| ||||| ||||    
T  5705976 tctcttggtcttctctcctagccttagctt 5705947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 6483718 - 6483772
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  6483718 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 6487185 - 6487239
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  6487185 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 21908360 - 21908414
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| |||| |||| |||||| ||||| || |||||||||||||    
T  21908360 aattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 23265143 - 23265197
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  23265143 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 23280211 - 23280265
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  23280211 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 23168480 - 23168412
Alignment:
Q  145 gattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 213  Q
    ||||||||||||||||| | |||  || |||||||   ||||| ||| |||||||||||||||||||||    
T  23168480 gattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaa 23168412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 23579737 - 23579669
Alignment:
Q  145 gattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 213  Q
    ||||||||||||||||| | |||  || |||||||   ||||| ||| |||||||||||||||||||||    
T  23579737 gattaagaaatcatactgaacatcaaattacaacacattaaacatgactcttacaccttttctttcaaa 23579669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 26583830 - 26583882
Alignment:
Q  270 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  26583830 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 26583882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 33 - 397
Target Start/End: Complemental strand, 20008237 - 20007872
Alignment:
Q  33 aactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaat 132  Q
    ||||||||||||| |||||||||||    || |||||||||||| ||   |||| ||||||||| |||||||||||||||||||| ||||||||||||      
T  20008237 aactaaacatcaacaacatcaattctattcattcaagcattcatgcaaggcttctaaaattcattcatcatattctattttcattccaattacgatcagc 20008138  T
Q  133 atcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttc-aaatcatcattaacccttatt 231  Q
    |||||||| || |||||||||| |||||||| |||  || ||||||| |||||||||||| |||| |||||||||||| |||||||| |||||||| | |    
T  20008137 atcaacaatatagattaagaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaat 20008038  T
Q  232 ttcccaattttaccttaagaacagtttaattgattaa-ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaa 330  Q
    |||||||||||||||||||||||||| |||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20008037 ttcccaattttaccttaagaacagttcaattgattaatttttcataaattatatattatgactattgaaagatgatcccacccttaccttagaattgcaa 20007938  T
Q  331 agacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  20007937 agacaa-aagcacagcaaatgagttcctaagttcttctctcttggtcttctctccttgccttagctt 20007872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 22 - 391
Target Start/End: Complemental strand, 9099372 - 9099005
Alignment:
Q  22 aaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaa 121  Q
    |||| |||||||| | | |||||| |||| ||||| |  |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||    
T  9099372 aaagaaacagcaaattagcatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaattcatctatcatattctattttcactccaa 9099273  T
Q  122 -ttacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcat 220  Q
     ||| ||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||   |||||||||    
T  9099272 attatgatcaatatcaacaatatagattaggaaatcatactaatcat-caaatacaacattataaacctgattcttacacattttcttcagaatcatcat 9099174  T
Q  221 taacccttattttcccaattttaccttaagaacagtttaattgattaa-ttttcagaaattacatattatgactattgaaagataatcccacccttacct 319  Q
    ||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  9099173 taaccctaaatttcccaattttaccttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttacct 9099074  T
Q  320 tagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcct 391  Q
    |||||||||||||| ||  ||  |||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  9099073 tagaattgcaaagataa--agtgcagcaaatcaattcctaagctcttctctcttggtcttctc-ccttgcct 9099005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 38 - 382
Target Start/End: Complemental strand, 21364763 - 21364423
Alignment:
Q  38 aacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaattacgatcaatatca 136  Q
    |||||||| |||| |||||||  | |||||| |||||||||||||||| ||||| ||||||||| ||||||||  |||||  |||||| |||||| ||||    
T  21364763 aacatcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatc-caattatgatcaacatca 21364665  T
Q  137 acaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttccc 236  Q
    |||| |  || || ||||||||| ||||||| ||||||||||||||||||||| | |||||||  |||||||  |||    |||||||||| |||| |||    
T  21364664 acaatacagagtaggaaatcatattaatcat-caaatacaacattataaacctaagtcttacatattttcttcaaaaatgccattaaccctaattt-ccc 21364567  T
Q  237 aattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 336  Q
    ||||||||| ||| ||||||| ||||| ||||||||||||||| | ||||||| | || |||| |||||||||||||||||||| |||||||||||||||    
T  21364566 aattttaccataa-aacagttaaattgcttaattttcagaaatcatatattatcattactgaaggataatcccacccttacctttgaattgcaaagacaa 21364468  T
Q  337 ttagcacagcaaatcagttcctaagttcttctctcttggtcttctc 382  Q
      ||||||||||| || |||||| ||||||||||||||||||||||    
T  21364467 -aagcacagcaaaacaattcctaggttcttctctcttggtcttctc 21364423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 38 - 382
Target Start/End: Complemental strand, 23968745 - 23968405
Alignment:
Q  38 aacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaattacgatcaatatca 136  Q
    |||||||| |||| |||||||  | |||||| |||||||||||||||| ||||| ||||||||| ||||||||  |||||  |||||| |||||| ||||    
T  23968745 aacatcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatc-caattatgatcaacatca 23968647  T
Q  137 acaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttccc 236  Q
    |||| |  || || ||||||||| ||||||| ||||||||||||||||||||| | |||||||  |||||||  |||    |||||||||| |||| |||    
T  23968646 acaatacagagtaggaaatcatattaatcat-caaatacaacattataaacctaagtcttacatattttcttcaaaaatgccattaaccctaattt-ccc 23968549  T
Q  237 aattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 336  Q
    ||||||||| ||| ||||||| ||||| ||||||||||||||| | ||||||| | || |||| |||||||||||||||||||| |||||||||||||||    
T  23968548 aattttaccataa-aacagttaaattgcttaattttcagaaatcatatattatcattactgaaggataatcccacccttacctttgaattgcaaagacaa 23968450  T
Q  337 ttagcacagcaaatcagttcctaagttcttctctcttggtcttctc 382  Q
      ||||||||||| || |||||| ||||||||||||||||||||||    
T  23968449 -aagcacagcaaaacaattcctaggttcttctctcttggtcttctc 23968405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 263 - 392
Target Start/End: Original strand, 31252419 - 31252549
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaa 360  Q
    ||||||||||||||||||| ||||||| |  ||| |||||||||| ||||||||||||||||||||||||||||    | |||||| |||| ||||||||    
T  31252419 gattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttagaattgcaaagacaaagaaaacacagc-aatcggttcctaa 31252517  T
Q  361 gttcttctctcttggtcttctctccttgcctt 392  Q
    ||||||||||||||||||||||||||||||||    
T  31252518 gttcttctctcttggtcttctctccttgcctt 31252549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 40 - 191
Target Start/End: Original strand, 29097637 - 29097789
Alignment:
Q  40 catcaagaacatcaattcagcccaatcaagcattcattcagaacttcc-aaaattcatccatcatattctattttcatttc-aattacgatcaatatcaa 137  Q
    |||||| |||| ||||| |  |||||||| |||||||||||||||||| |||||||||| || |||||||||||||| ||| ||||| ||||||||||||    
T  29097637 catcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaaattcatctattatattctattttcacttcaaattatgatcaatatcaa 29097736  T
Q  138 caacatggattaagaaatcatactaatcattcaaatacaacattataaacctga 191  Q
    ||  || ||||| |||||||||||||||| |||||||||||| |||||||||||    
T  29097737 cattatagattaggaaatcatactaatca-tcaaatacaacagtataaacctga 29097789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 269 - 397
Target Start/End: Complemental strand, 11288721 - 11288596
Alignment:
Q  269 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttct 368  Q
    ||||||||||||| |||||| ||  ||||||||||||||||||||||||||||||||||| |||||||  | |||||| |||||||||||||| ||||||    
T  11288721 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagaattgccaagacaa-aaacacagc-aatcagttcctaagctcttct 11288624  T
Q  369 ctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||| ||||||||| ||||    
T  11288623 ctcttggtcttctc-ccttgccttagctt 11288596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 15458492 - 15458559
Alignment:
Q  269 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 336  Q
    ||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  15458492 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaa 15458559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 15465087 - 15465154
Alignment:
Q  269 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 336  Q
    ||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  15465087 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaa 15465154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 397
Target Start/End: Complemental strand, 28288537 - 28288437
Alignment:
Q  294 attgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgccttt 393  Q
    ||||| ||||| || ||||||||||||||||||||||||||||  | |||||| |||||||||||||| | |||||||||||||||||| |||||||||     
T  28288537 attgagagatagtctcacccttaccttagaattgcaaagacaa-aaacacagc-aatcagttcctaagcttttctctcttggtcttctc-ccttgcctta 28288441  T
Q  394 gctt 397  Q
    ||||    
T  28288440 gctt 28288437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 267 - 397
Target Start/End: Complemental strand, 34640041 - 34639910
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttc 364  Q
    ||||||||||||||| | |||| || |||||| ||||| || |||||||||||||||||||| |||||||    | |||||| ||||  |||   |||||    
T  34640041 aattttcagaaattatagattaagattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttc 34639943  T
Q  365 ttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||||| ||||    
T  34639942 ttctctcttggtcttctctccttgccttagctt 34639910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 267 - 397
Target Start/End: Complemental strand, 34646715 - 34646584
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttc 364  Q
    ||||||||||||||| | |||| || |||||| ||||| || |||||||||||||||||||| |||||||    | |||||| ||||  |||   |||||    
T  34646715 aattttcagaaattatagattaagattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttc 34646617  T
Q  365 ttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||||| ||||    
T  34646616 ttctctcttggtcttctctccttgccttagctt 34646584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 397
Target Start/End: Original strand, 24563475 - 24563569
Alignment:
Q  304 aatcccacccttaccttagaattgcaaagacaattag--cacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||| ||||||||||||||||||||||||||||  |   |||||||| ||  ||||  ||||||||||||||||||||||||||||||||| ||||    
T  24563475 aatctcacccttaccttagaattgcaaagacaaagaaaacacagcaa-tcgattccctagttcttctctcttggtcttctctccttgccttagctt 24563569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 10986235 - 10986173
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 329  Q
    |||||| |||||||| | ||||||| |||||||||||| || |||||||||||||||||||||    
T  10986235 aatttttagaaattatagattatgattattgaaagatagtctcacccttaccttagaattgca 10986173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 397
Target Start/End: Complemental strand, 24641644 - 24641607
Alignment:
Q  360 agttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  24641644 agttcttctctcttggtcttctctccttgccttagctt 24641607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 29614201 - 29614146
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  29614201 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 29614146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 4477858 - 4477912
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  4477858 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 23839199 - 23839253
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||    
T  23839199 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 24512898 - 24512836
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 329  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||| |||||||| |||||    
T  24512898 aattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgca 24512836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 12168366 - 12168418
Alignment:
Q  270 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  12168366 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 12168418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 19287275 - 19287327
Alignment:
Q  270 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  19287275 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 19287327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 19785921 - 19785869
Alignment:
Q  270 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  19785921 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 19785869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 19878459 - 19878511
Alignment:
Q  270 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  19878459 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 19878511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 15 - 397
Target Start/End: Original strand, 747 - 1126
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc 114  Q
    |||||||| ||||||||||||||||||| || |||| |||| ||||||||||||||||| || |||||  ||| |||||||| ||| | || ||||||||    
T  747 gacatcaacaggaacagcaactaaacataaacaacaacaatccagcccaatcaagcattaatacagaaaatcccaaattcatacataacatgctattttc 846  T
Q  115 atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaat 214  Q
    ||  |||||| |||||| | |||||  || |||    || || |||||||||| |||| ||||| |||||||||| | |||||||| |||||||  ||||    
T  847 atc-caattatgatcaacaacaacattatagatcggaaactcttactaatcat-caaacacaactttataaacctaaatcttacacattttcttcaaaat 944  T
Q  215 catcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccct 314  Q
    |  |||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||| | ||||||| |||||||| |||| ||||||||||    
T  945 cgccattaaccctaattttcccaattttaccataagaacagttaaattgcttaattttcagaaatcatatattatcactattgagagatgatcccaccct 1044  T
Q  315 taccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||||||  |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||    
T  1045 taccttagaattgcaaagacaa-aagcacagcaaatcaattcctaggttcttctctcttggtcttctctccttgccttagctt 1126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 173 - 397
Target Start/End: Complemental strand, 2062 - 1837
Alignment:
Q  173 tacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttcccaattttacctt-aagaacagtttaattgattaatt 270  Q
    |||||||  |||||||| ||||||||||||||||||||||| |||||||||||||||| || ||||||||||| || |||||||||| ||||||||||||    
T  2062 tacaacacaataaacctaattcttacaccttttctttcaaaatcatcattaacccttaatt-cccaattttactttcaagaacagttcaattgattaatt 1964  T
Q  271 ttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttctct 370  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| ||||||||||||||||||    
T  1963 ttcagaaattatatattatgactattgaaagataatcccacccttaccttacaattgcaaagacaaaaagcacagcaaatccgttcctaagttcttctct 1864  T
Q  371 cttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||| ||||    
T  1863 cttggtcttctctccttgccttagctt 1837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 39 - 327
Target Start/End: Original strand, 9108 - 9396
Alignment:
Q  39 acatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaac 138  Q
    ||||||| |||| |||||||||||| ||||||| |||| || ||||||| || ||||||||||||||||||||||| || |||||  |||||  ||||||    
T  9108 acatcaacaacaacaattcagcccattcaagcaatcatacaaaacttcccaa-ttcatccatcatattctattttcgttccaattctgatcacaatcaac 9206  T
Q  139 aacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa-tcatcattaacccttattttccca 237  Q
    ||||| |||| |||||||||||||| |||  || |||||||  |||||||| ||||||||||||||||||||||| |||||||||||||||| || ||||    
T  9207 aacatagattgagaaatcatactaaacatcaaattacaacacaataaacctaattcttacaccttttctttcaaaatcatcattaacccttaatt-ccca 9305  T
Q  238 attttacctt-aagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattg 327  Q
    ||||||| || |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9306 attttacttttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttagaattg 9396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 363
Target Start/End: Complemental strand, 16370 - 16023
Alignment:
Q  15 gacatcaaaaggaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctatttt- 113  Q
    ||||||||||| ||||||||   ||||| || |||| |||||||   ||||||| |||||||||||||||||||||| || || |||||||||||||||     
T  16370 gacatcaaaagaaacagcaatccaacataaacaacaacaattcattacaatcaa-cattcattcagaacttccaaaactcttctatcatattctattttt 16272  T
Q  114 catttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 213  Q
    || |||||||| ||||||||| ||||| || |||||  |||||||||||||||| |||||||||||| || |||||||||||| ||| |||||||  |||    
T  16271 cacttcaattatgatcaatatgaacaatatagattagaaaatcatactaatcat-caaatacaacatcatgaacctgattcttgcacattttcttcaaaa 16173  T
Q  214 tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaatttt-cagaaattacatattatgactattgaaagataatcccacc 312  Q
    |||||||||||||| | || || | ||||| ||||| ||||||| |||||||||||||| ||||||| | ||||||| ||||||||||||||||||||||    
T  16172 tcatcattaaccctaaatt-ccaatttttatcttaaaaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacc 16074  T
Q  313 cttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagtt 363  Q
    ||||||||||||||| |   | ||||| ||||||||||||| |||||||||    
T  16073 cttaccttagaattgtaggaagaattaacacagcaaatcagctcctaagtt 16023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1469 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold1469
Description:

Target: scaffold1469; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 39 - 336
Target Start/End: Original strand, 1129 - 1424
Alignment:
Q  39 acatcaagaacatcaattcagcccaatcaagcattcattcagaa-cttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaa 137  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||| |||||||| ||||  ||| | || ||||||||||  |||||| |||||| | |||    
T  1129 acatcaacaacaacaattcagcccaatcaagcattcatacagaaacttccaaa-ttcacacataacatgctattttcatc-caattatgatcaacaacaa 1226  T
Q  138 caacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaacccttattttccca 237  Q
    ||| |  ||||| ||||||||||||||||| ||| || |||||| ||||||||| |||||| | |||||||  ||||||||||||  ||| |||||||||    
T  1227 caatacagattaggaaatcatactaatcat-caattataacattgtaaacctgaatcttacgcattttcttcaaaatcatcattagacctaattttccca 1325  T
Q  238 attttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 336  Q
    |||||||||||||||||||| ||||| ||||||||||||||  | ||||||  |||||||||||  |||||||||||||||||||||||||||||||||    
T  1326 attttaccttaagaacagttaaattgtttaattttcagaaagcatatattaacactattgaaaggaaatcccacccttaccttagaattgcaaagacaa 1424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 26 - 382
Target Start/End: Complemental strand, 91499 - 91144
Alignment:
Q  26 gaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaatta 124  Q
    ||||||||| | |||||||| |||| |||||||  | |||||| |||||||||||||||| ||||| ||||||||| ||||||||  |||||  ||||||    
T  91499 gaacagcaattcaacatcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatc-caatta 91401  T
Q  125 cgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaac 224  Q
     |||||| |||| ||| |  || || ||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||||||  ||||   |||||||    
T  91400 tgatcaacatcaccaatacagagtaggaaatcatattaatcat-caaatacaacattataaacctaaatcttacacattttcttcaaaattgccattaac 91302  T
Q  225 ccttattttcccaatttt---accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||| |||| |||||||||   ||| ||| ||||||| ||||| ||||||||||||||| | ||||||| | ||||||||||| |||||||||||||||||    
T  91301 cctaattt-cccaatttttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatgatcccacccttacctta 91203  T
Q  322 gaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctc 382  Q
    |||||||||||| ||  ||  ||||||| || || ||||| ||||||||||||||||||||    
T  91202 gaattgcaaagataa--agtgcagcaaaccaatttctaagctcttctctcttggtcttctc 91144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 26 - 382
Target Start/End: Complemental strand, 97225 - 96870
Alignment:
Q  26 gaacagcaactaaacatcaagaacatcaattcagcccaatcaagcattcattcagaacttccaaaa-ttcatccatcatattctattttcatttcaatta 124  Q
    ||||||||| | |||||||| |||| |||||||  | |||||| |||||||||||||||| ||||| ||||||||| ||||||||  |||||  ||||||    
T  97225 gaacagcaattcaacatcaacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatc-caatta 97127  T
Q  125 cgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaatcatcattaac 224  Q
     |||||| |||| ||| |  || || ||||||||| ||||||| ||||||||||||||||||||| | |||||||| |||||||  ||||   |||||||    
T  97126 tgatcaacatcaccaatacagagtaggaaatcatattaatcat-caaatacaacattataaacctaaatcttacacattttcttcaaaattgccattaac 97028  T
Q  225 ccttattttcccaatttt---accttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||| |||| |||||||||   ||| ||| ||||||| ||||| ||||||||||||||| | ||||||| | ||||||||||| |||||||||||||||||    
T  97027 cctaattt-cccaatttttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatgatcccacccttacctta 96929  T
Q  322 gaattgcaaagacaattagcacagcaaatcagttcctaagttcttctctcttggtcttctc 382  Q
    |||||||||||| ||  ||  ||||||| || || ||||| ||||||||||||||||||||    
T  96928 gaattgcaaagataa--agtgcagcaaaccaatttctaagctcttctctcttggtcttctc 96870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 111885 - 111938
Alignment:
Q  269 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    ||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  111885 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 250 - 392
Target Start/End: Original strand, 10222 - 10364
Alignment:
Q  250 gaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaa 349  Q
    ||||| || ||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| | ||||||  |||||||||||    
T  10222 gaacaattcaattgattaattttcagaaattacatattatgattattggaagataatctcacccttaccttagaattgtagagacaaaaagcacagcaaa 10321  T
Q  350 tcagttcctaagttcttctctcttggtcttctctccttgcctt 392  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  10322 tccgttcctaagttcttctctcttggtcttctctccttgcctt 10364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 263 - 397
Target Start/End: Complemental strand, 493086 - 492953
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagt 362  Q
    ||||||||||||||||||| | |||| || ||||||||||||||| ||||||||||||||||||||| ||||||  ||||||||||||| ||||||||||    
T  493086 gattaattttcagaaattatacatta-gattattgaaagataatctcacccttaccttagaattgcagagacaaaaagcacagcaaatccgttcctaagt 492988  T
Q  363 tcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||||||| ||||    
T  492987 tcttctctcttggtcttctctccttgccttagctt 492953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 267 - 392
Target Start/End: Complemental strand, 10250 - 10125
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttctt 366  Q
    ||||||||||||||| | ||||||| |||||| ||||| |||||||||||||||||||||| | ||||||  ||||||||||||| ||||||||||||||    
T  10250 aattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttctt 10151  T
Q  367 ctctcttggtcttctctccttgcctt 392  Q
    ||||||||||||||||||||||||||    
T  10150 ctctcttggtcttctctccttgcctt 10125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 363
Target Start/End: Complemental strand, 11111 - 11042
Alignment:
Q  294 attgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagtt 363  Q
    |||||| ||||||||||||||||||||||||||  |   | ||||| ||||||||||||| |||||||||    
T  11111 attgaaggataatcccacccttaccttagaattttaggaagaattaacacagcaaatcagctcctaagtt 11042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 267 - 392
Target Start/End: Complemental strand, 1580 - 1455
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttctt 366  Q
    ||||||||||||||| | ||||||| |||||| ||||| |||||||||||||||||||||| | ||||||  ||||||||||||| ||||||||||||||    
T  1580 aattttcagaaattatagattatgattattgagagatagtcccacccttaccttagaattgtatagacaaaaagcacagcaaatccgttcctaagttctt 1481  T
Q  367 ctctcttggtcttctctccttgcctt 392  Q
    ||||||||||||||||||||||||||    
T  1480 ctctcttggtcttctctccttgcctt 1455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 263 - 397
Target Start/End: Complemental strand, 3461 - 3327
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagt 362  Q
    ||||||||||||||||||| ||||||     |||||||||||||  ||||||||||||||||||||||||||||  ||||| ||||||| ||||||||||    
T  3461 gattaattttcagaaattatatattaaattcattgaaagataatatcacccttaccttagaattgcaaagacaaaaagcacggcaaatccgttcctaagt 3362  T
Q  363 tcttctctcttggtcttctctccttgcctttgctt 397  Q
    ||| |||||||||||||||||| ||||||| ||||    
T  3361 tctcctctcttggtcttctctcgttgccttagctt 3327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 263 - 397
Target Start/End: Complemental strand, 5916 - 5781
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaa 360  Q
    ||||||||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||||||||||    | |||||| |||| |||||  |    
T  5916 gattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaaagaaaacacagc-aatcggttcccta 5818  T
Q  361 gttcttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||||||||| ||||    
T  5817 gttcttctctcttggtcttctctccttgccttagctt 5781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 269 - 391
Target Start/End: Original strand, 6 - 125
Alignment:
Q  269 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagcaaatcagttcctaagttcttct 368  Q
    ||||||||||| | ||||||  ||||||||||||||||||||||||||||||||||||||||||| ||  ||  |||||| ||| |||||||| ||||||    
T  6 ttttcagaaatcatatattagaactattgaaagataatcccacccttaccttagaattgcaaagataa--agtgcagcaagtcaattcctaagctcttct 103  T
Q  369 ctcttggtcttctctccttgcct 391  Q
    |||||||||||||| ||||||||    
T  104 ctcttggtcttctc-ccttgcct 125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 320
Target Start/End: Original strand, 12753 - 13019
Alignment:
Q  70 cattcattcagaac-ttccaaa-attcatccatcatattctatttt-catttcaatt--acgatcaatatcaacaacatggattaagaaatcatactaat 164  Q
    |||||||||||||| ||||||  ||||||| ||||||||||||||| || | ||| |  | ||||||||||||||  || ||||| ||||||||||||||    
T  12753 cattcattcagaaccttccaaccattcatctatcatattctatttttcactccaaattaatgatcaatatcaacattatagattaggaaatcatactaat 12852  T
Q  165 cattcaaatacaacattataaacct-gattctt-acaccttttctttcaaatcat-cattaacccttattttccc--aattttacc-ttaagaacagttt 258  Q
    ||| ||||||||||||||||||||| ||||||| |||| ||| |||   |||||| |||||||||| | ||||||  | ||||||| ||||||||||||     
T  12853 catacaaatacaacattataaacctagattcttaacacatttccttcagaatcatacattaaccctaaatttccccaatttttacctttaagaacagtta 12952  T
Q  259 aa---ttgattaa-ttttcagaaattacatattatgactattg-aaagataatcccacccttacctt 320  Q
    ||   | |||||| |||| |||||| | ||||||  ||||||| |||||||||||||||||||||||    
T  12953 aaatttagattaattttttagaaatcatatattagaactattgtaaagataatcccacccttacctt 13019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 336
Target Start/End: Complemental strand, 13947 - 13880
Alignment:
Q  269 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa 336  Q
    ||||||||||||| ||||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  13947 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttagaattgcaaagacaa 13880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 397
Target Start/End: Original strand, 111686 - 111817
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttc 364  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||||||||||| |||||||    | |||||| ||||  |||   |||||    
T  111686 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagaattgcgaagacaaagaaaacacagc-aatcgattctctagttc 111784  T
Q  365 ttctctcttggtcttctctccttgcctttgctt 397  Q
    |||||||||||||||||||||||||||| ||||    
T  111785 ttctctcttggtcttctctccttgccttagctt 111817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 11905 - 11850
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  11905 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 11850  T

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Target: scaffold0261 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 329
Target Start/End: Complemental strand, 23628 - 23562
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 329  Q
    ||||||||||||||||||| | |||||||  ||| ||||||||||||||||||||||||||||||||    
T  23628 gattaattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgca 23562  T

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Target: scaffold0261; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 23748 - 23680
Alignment:
Q  145 gattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaa 213  Q
    ||||||||||||||||| | |||  || |||||||   ||||| ||||||||||| |||||||||||||    
T  23748 gattaagaaatcatactgaacatcaaattacaacacattaaacatgattcttacatcttttctttcaaa 23680  T

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Target: scaffold0453 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 326
Target Start/End: Complemental strand, 10609 - 10546
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaatt 326  Q
    ||||||||||||||||||| | |||| ||  |||||||||||||||||| ||||||||||||||    
T  10609 gattaattttcagaaattatacattaagatcattgaaagataatcccacacttaccttagaatt 10546  T

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Target: scaffold0034 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 73281 - 73347
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 329  Q
    |||||||||||| |||||| | |||||||  |||||||||||||||||||||||||| | |||||||    
T  73281 gattaattttcataaattatacattatgatcattgaaagataatcccacccttacctcataattgca 73347  T

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Target: scaffold2054 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 322
Target Start/End: Original strand, 717 - 770
Alignment:
Q  269 ttttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    ||||||||||||| |||||| ||  |||||||||||||||||||||||||||||    
T  717 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttag 770  T

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Target: scaffold1461 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1461
Description:

Target: scaffold1461; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 1543 - 1485
Alignment:
Q  263 gattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    |||||||||||||||||| ||||||| ||  |||| ||||||||| |||||||||||||    
T  1543 gattaattttcagaaattgcatattaagatcattgcaagataatctcacccttacctta 1485  T

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Target: scaffold0129 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 397
Target Start/End: Complemental strand, 45326 - 45198
Alignment:
Q  270 tttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaa--ttagcacagcaaatcagttcctaagttcttc 367  Q
    |||||| ||||| | ||||||| |||||| ||||| || ||||||||||||||| |||| |||||||    | |||||| ||||  |||   ||||||||    
T  45326 tttcaggaattatagattatgattattgagagatagtctcacccttaccttagatttgcgaagacaaagaaaacacagc-aatcgattctctagttcttc 45228  T
Q  368 tctcttggtcttctctccttgcctttgctt 397  Q
    ||||||||||||||||||| ||||| ||||    
T  45227 tctcttggtcttctctcctagccttagctt 45198  T

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Target: scaffold0107 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 329
Target Start/End: Complemental strand, 40586 - 40524
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgca 329  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || ||||||||||||||| |||||    
T  40586 aattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgca 40524  T

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Target: scaffold0235 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 379
Target Start/End: Complemental strand, 22646 - 22536
Alignment:
Q  268 attttcagaaattacatattatgactattgaaagataatcccacccttaccttagaattgcaaagacaattagcacagc-aaatcagttcctaagttctt 366  Q
    |||||||||||||| ||| ||||| |||||| ||||| || |||||||||||| || ||||  ||| |  | ||||||| ||||| ||||||| | ||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgc--agaaatattgcacagcaaaatcggttcctaggctctt 22549  T
Q  367 ctctcttggtctt 379  Q
    |||||||||||||    
T  22548 ctctcttggtctt 22536  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 135474 - 135530
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 323  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||||    
T  135474 aattttcagaaattatatactatgattattgagagatagtctcacccttaccttaga 135530  T

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Target: scaffold0924 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 805 - 750
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  805 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 750  T

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Target: scaffold0247 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 11342 - 11397
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  11342 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 11397  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 30858 - 30913
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 322  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  30858 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 30913  T

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Target: scaffold0317 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 1367 - 1441
Alignment:
Q  248 aagaacagtttaatt-gattaattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||| ||||||| ||| |||||||| |||||| |||| ||||  ||||||||||| || |||||||||||||    
T  1367 aagaacaatttaattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

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Target: scaffold0222 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 16821 - 16875
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  16821 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 116897 - 116951
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacctta 321  Q
    ||||||||||||||| ||| ||||| |||||| ||||| || |||||||||||||    
T  116897 aattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

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Target: scaffold0085 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 3962 - 3921
Alignment:
Q  33 aactaaacatcaagaacatcaattcagcccaatcaagcattc 74  Q
    ||||||||||||| |||| |||||||||||| ||||||||||    
T  3962 aactaaacatcaacaacaacaattcagcccattcaagcattc 3921  T

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Target: scaffold0310 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 17644 - 17700
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttaga 323  Q
    ||||||||||||||| | ||||||  |||||| ||||| || |||||||||||||||    
T  17644 aattttcagaaattatacattatggttattgagagatagtctcacccttaccttaga 17700  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 14450 - 14398
Alignment:
Q  267 aattttcagaaattacatattatgactattgaaagataatcccacccttacct 319  Q
    ||||||||||||||| | ||||||| |||||| ||||| || |||||||||||    
T  14450 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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