View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11398_low_5 (Length: 282)
Name: NF11398_low_5
Description: NF11398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11398_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 5479291 - 5479014
Alignment:
| Q |
9 |
tgctttaggaatccatggtggatcagtcatccggacgcgagaacagtggtaaacacaaacaaaagaaagttgaatgagtgtagggatttcgcacaatgcg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5479291 |
tgctttaggaatccatggtggatcagtcatccggacgcgagaacaatagtaaacacaaacaaaagaaagttgaatgagtgtagggatttcgcacaatgcg |
5479192 |
T |
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| Q |
109 |
atagggttgtgccagctttgatagtatctcataccagcattcattggagacggtggaagaagcttttacatatagtttactcgtcaaagcttcgaaaaga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5479191 |
atagggttgtgccagctttgatagtatctcataccagcattcgttggagaaggtggaagaagcttttacatatagtttactcgtcaaagcttcgaaaaga |
5479092 |
T |
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| Q |
209 |
taactttttactactgcaacg----nnnnnnnnnatcaattttaaagttttaaaatattctttaacttgtttttcata |
282 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5479091 |
taactttttactactgcaacgtttttttttttttatcaattttaaagttttaaaatattctttaacttgtttttcata |
5479014 |
T |
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