View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_high_100 (Length: 354)

Name: NF1139_high_100
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_high_100
NF1139_high_100
[»] chr1 (2 HSPs)
chr1 (96-295)||(52145415-52145614)
chr1 (114-171)||(52142021-52142078)
[»] chr8 (1 HSPs)
chr8 (96-168)||(17522491-17522563)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 96 - 295
Target Start/End: Complemental strand, 52145614 - 52145415
Alignment:
Q  96 aaacgaaggatgtcttgctaaacccaagagctcaaagcttttcaactgaaatctcaggcttccttacccagaatgaagacgttgatgacgaagatgaagg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52145614 aaacgaaggatgtcttgctaaacccaagagctcaaagcttttcaactgaaatctcaggcttccttacccagaatgaagacgttgatgacgaagatgaagg 52145515  T
Q  196 aactaagttatacatgtgtccaaataagtgtaaatttgaggtaacaaatgataacacaactcgttgtactgccctgtctgccaatgaccattctcatatt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52145514 aactaagttatacatgtgtccaaataagtgtaaatttgaggtaacaaatgataacacaactcgttgtactgccctgtctgccaatgaccattctcatatt 52145415  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 52142078 - 52142021
Alignment:
Q  114 taaacccaagagctcaaagcttttcaactgaaatctcaggcttccttacccagaatga 171  Q
    |||||||||||||||||||||  ||||||||||| ||||| |||||||||||||||||    
T  52142078 taaacccaagagctcaaagctcgtcaactgaaatttcaggattccttacccagaatga 52142021  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 17522491 - 17522563
Alignment:
Q  96 aaacgaaggatgtcttgctaaacccaagagctcaaagcttttcaactgaaatctcaggcttccttacccagaa 168  Q
    |||||||||||||  |  |||||||||||||||||||||  |||||||||||| |||| |||||||| |||||    
T  17522491 aaacgaaggatgttctcttaaacccaagagctcaaagctcgtcaactgaaatcgcaggattccttactcagaa 17522563  T

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