View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_101 (Length: 351)
Name: NF1139_high_101
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_101 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 178 - 319
Target Start/End: Complemental strand, 50511365 - 50511224
Alignment:
| Q |
178 |
ctcttagctagctagtactctagtttttaagaatgaaattcagtatttgagagtgtacaatattcacacacattaccaaaaaacatttgaagaaaagttt |
277 |
Q |
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| T |
50511365 |
ctcttagctagctagtactctagtttttaagaatgaaattcagtatttgagagtgtacaatattcacacacattaccaaaaaacatttgaagaaaagttt |
50511266 |
T |
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| Q |
278 |
tgttatccatcacgaatattcagttcacacactttgtccatt |
319 |
Q |
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| T |
50511265 |
tgttatccatcacgaatattcagttcacacactttgtccatt |
50511224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 50511512 - 50511437
Alignment:
| Q |
30 |
atttgaggtatttcttcttccaccaaagtaaacgtccaaacaagaggatagtggaattatgctctacttgttttggg |
106 |
Q |
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| T |
50511512 |
atttgaggtatttcttcttccaccaaagtaa-cgtccaaacaagaggatagtggaattatgctctacttgttttggg |
50511437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 344
Target Start/End: Original strand, 38570834 - 38570864
Alignment:
| Q |
314 |
tccattgctttctctccctcatcttcatctc |
344 |
Q |
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| T |
38570834 |
tccattgctttctctccctcatcttcatctc |
38570864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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