View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_high_104 (Length: 346)

Name: NF1139_high_104
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_high_104
NF1139_high_104
[»] chr4 (13 HSPs)
chr4 (163-333)||(7291458-7291628)
chr4 (30-137)||(7291352-7291459)
chr4 (50-170)||(47304545-47304665)
chr4 (49-154)||(53994631-53994736)
chr4 (50-153)||(47681643-47681746)
chr4 (50-170)||(15521755-15521875)
chr4 (51-170)||(34458656-34458775)
chr4 (49-116)||(43137143-43137210)
chr4 (49-117)||(1458766-1458834)
chr4 (50-117)||(23602417-23602484)
chr4 (50-128)||(19901510-19901588)
chr4 (55-112)||(13610884-13610941)
chr4 (55-145)||(31763264-31763354)
[»] chr5 (7 HSPs)
chr5 (49-145)||(16719676-16719772)
chr5 (49-145)||(34583014-34583110)
chr5 (58-148)||(12621861-12621951)
chr5 (55-116)||(10542335-10542396)
chr5 (49-153)||(31224231-31224335)
chr5 (49-131)||(40897037-40897119)
chr5 (49-145)||(5927187-5927283)
[»] chr3 (4 HSPs)
chr3 (60-163)||(53199961-53200064)
chr3 (49-145)||(9798545-9798641)
chr3 (50-108)||(44028256-44028314)
chr3 (30-114)||(54739189-54739273)
[»] chr2 (8 HSPs)
chr2 (55-153)||(30491111-30491209)
chr2 (49-145)||(38855125-38855221)
chr2 (50-116)||(40355562-40355628)
chr2 (52-145)||(38119981-38120074)
chr2 (49-145)||(34640499-34640595)
chr2 (49-131)||(38064468-38064550)
chr2 (49-98)||(12069075-12069124)
chr2 (50-131)||(41533417-41533498)
[»] chr1 (7 HSPs)
chr1 (50-131)||(38669553-38669634)
chr1 (30-114)||(9857278-9857361)
chr1 (55-111)||(8772545-8772601)
chr1 (50-144)||(51127104-51127198)
chr1 (50-107)||(3289597-3289654)
chr1 (50-163)||(40707733-40707846)
chr1 (50-154)||(13258751-13258855)
[»] chr8 (6 HSPs)
chr8 (50-113)||(16576632-16576695)
chr8 (55-131)||(29909313-29909389)
chr8 (50-111)||(29443052-29443113)
chr8 (56-131)||(18311157-18311232)
chr8 (55-113)||(6636227-6636285)
chr8 (55-108)||(6628428-6628481)
[»] chr7 (8 HSPs)
chr7 (49-116)||(9459229-9459296)
chr7 (49-111)||(5738605-5738667)
chr7 (55-116)||(12218623-12218684)
chr7 (55-112)||(9626305-9626362)
chr7 (55-115)||(3525501-3525561)
chr7 (50-113)||(4919710-4919773)
chr7 (55-111)||(3406170-3406226)
chr7 (55-131)||(27157105-27157181)
[»] chr6 (5 HSPs)
chr6 (50-163)||(16166213-16166327)
chr6 (52-117)||(697884-697949)
chr6 (55-115)||(15055935-15055995)
chr6 (50-113)||(30591368-30591431)
chr6 (56-114)||(6138618-6138676)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 163 - 333
Target Start/End: Original strand, 7291458 - 7291628
Alignment:
Q  163 gacttattaagatataaatgaagtaaatcacgacttatagaattacatactacatacatgatagtagcaatactttcttagtcacatccctgtatataaa 262  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7291458 gacttattaagatataaatgaagtaaatcacgacttgtagaattacatactacatacatgatagtagcaatactttcttagtcacatcccggtatataaa 7291557  T
Q  263 tgaccaaaaattaagttaaatgattaatgaaacaaattgtttcacaaccccatcttttttgatggtgatat 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7291558 tgaccaaaaattaagttaaatgattaatgaaacaaattgtttcacaaccccatcttttttgatggtgatat 7291628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 7291352 - 7291459
Alignment:
Q  30 ttttataatcataaaccatgcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttag 129  Q
    ||||||||||||||  ||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||    
T  7291352 ttttataatcataagtcagacctaattaaattaataggctttttaaaaagctcaaacttgactcatttactaaacgagttaggccgaaccggtcttttag 7291451  T
Q  130 tataccga 137  Q
    ||| ||||    
T  7291452 tatgccga 7291459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 50 - 170
Target Start/End: Complemental strand, 47304665 - 47304545
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcataggtcct 149  Q
    |||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| |||| |||||||||  ||||| |||||| ||     
T  47304665 cctaattaaattgataggatttttaaaaagttcaagcttgactcatttattaaacgagttaggccgagtcgggcttttagtagcccgagccataggcccc 47304566  T
Q  150 tgacaggtggcctgacttatt 170  Q
    ||||||  |||||||| ||||    
T  47304565 tgacagacggcctgacctatt 47304545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 53994736 - 53994631
Alignment:
Q  49 gcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcataggtcc 148  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||| || ||| |||||||||  ||||| |||||| ||    
T  53994736 gcctaattaaattaataggctttttaaaaagctcaactttgactcatttattaaacgagttaggccaaaccgggcttttagtaggccgagccataggccc 53994637  T
Q  149 ttgaca 154  Q
     |||||    
T  53994636 ctgaca 53994631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 153
Target Start/End: Complemental strand, 47681746 - 47681643
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcataggtcct 149  Q
    ||||||||||||||||| ||||||||||| |||||||||||| |||||| |||||||| ||||||||  |||||||||||||  |||| ||||||| |||    
T  47681746 cctaattaaattaatagactttttaaaaatctcaagcttgacccatttattaaacgagctaggccgagccggacttttagtaggccgaatcataggccct 47681647  T
Q  150 tgac 153  Q
    ||||    
T  47681646 tgac 47681643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 170
Target Start/End: Original strand, 15521755 - 15521875
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcataggtcct 149  Q
    |||||||||||||||||||||||||||||||||||| || || |||||| ||||| ||||||| |||  |||||||||||||  | |||||||||| ||     
T  15521755 cctaattaaattaataggctttttaaaaagctcaagtttaacccatttattaaacaagttaggtcgagccggacttttagtaggctgagtcataggcccc 15521854  T
Q  150 tgacaggtggcctgacttatt 170  Q
    ||||  |||| ||||| ||||    
T  15521855 tgacgagtggtctgacctatt 15521875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 51 - 170
Target Start/End: Original strand, 34458656 - 34458775
Alignment:
Q  51 ctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcataggtcctt 150  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||||||||  || ||||||| ||  ||||| |||||| || |    
T  34458656 ctaattaaattaataggctctttaaaaagctcaagtttgacccatttattaaacgagttaggccgacccgaacttttactaggccgagccataggcccct 34458755  T
Q  151 gacaggtggcctgacttatt 170  Q
    |||  | |||||||| ||||    
T  34458756 gacgagcggcctgacctatt 34458775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 43137210 - 43137143
Alignment:
Q  49 gcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccga 116  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||||||    
T  43137210 gcctaattaaattaatagggtttttaaaaagctcaagcttgacacatttattaaacgagctaggccga 43137143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 1458766 - 1458834
Alignment:
Q  49 gcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaa 117  Q
    ||||||||||||||||||| |||| |||||||||||| || ||||||||| |||||||| |||||||||    
T  1458766 gcctaattaaattaataggtttttaaaaaagctcaagtttaactcatttattaaacgagctaggccgaa 1458834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 23602417 - 23602484
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaa 117  Q
    ||||||||||||||||| |||||||||||| ||||  || ||||||||| ||||||||||||||||||    
T  23602417 cctaattaaattaatagactttttaaaaagttcaaatttaactcatttattaaacgagttaggccgaa 23602484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 19901588 - 19901510
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggactttta 128  Q
    |||| ||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||||  || |||| |||||||    
T  19901588 cctatttaaattaatatgctttttaaaaagctcaagcttgacctatttattaaacgagttagttcggatcgaactttta 19901510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 13610941 - 13610884
Alignment:
Q  55 ttaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttagg 112  Q
    ||||||||||| ||||||||||||||||| | |||||  ||||| |||||||||||||    
T  13610941 ttaaattaataagctttttaaaaagctcatgtttgacctatttattaaacgagttagg 13610884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 31763354 - 31763264
Alignment:
Q  55 ttaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcatagg 145  Q
    |||||||||||||||||||||||||||||   || ||  ||||| |||| |||||||| ||  |||| |||||||||  |||| |||||||    
T  31763354 ttaaattaataggctttttaaaaagctcatatttaacctatttattaaatgagttaggtcgggtcgggcttttagtaggccgaatcatagg 31763264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 16719772 - 16719676
Alignment:
Q  49 gcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcatagg 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||  | |||||||||||  ||||| ||||||    
T  16719772 gcctaattaaattaataggctttttaaaaagctcaagcttgactcatttattaaacgagttaggctgagccagacttttagtaggccgagccatagg 16719676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 34583110 - 34583014
Alignment:
Q  49 gcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcatagg 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||  ||  |||||||||  ||||| ||||||    
T  34583110 gcctaattaaattaataggctttttaaaaagctcaagcttgactcattgattaaacgagttaggccgagccgagcttttagtaggccgagccatagg 34583014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 12621861 - 12621951
Alignment:
Q  58 aattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcataggtcc 148  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| || | |||||||||||  ||||| |||||||||    
T  12621861 aattaataggctttttaaaaagctcaaacttgactcatttattaaacgagctaggccaaaccagacttttagtaggccgagccataggtcc 12621951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 10542335 - 10542396
Alignment:
Q  55 ttaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccga 116  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||    
T  10542335 ttaaattaataggctttttaaaaagctcaagcttgacccatttattaaacgagttaagccga 10542396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 31224231 - 31224335
Alignment:
Q  49 gcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcataggtcc 148  Q
    |||||||| ||||||||| |||||| ||||| ||||| || || |||||| |||||||||||||||||   ||||||||| || |||||  |||||||||    
T  31224231 gcctaattgaattaatagacttttttaaaagttcaagtttaacccatttattaaacgagttaggccgagcaggacttttaatagaccgaaccataggtcc 31224330  T
Q  149 ttgac 153  Q
     ||||    
T  31224331 atgac 31224335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 40897119 - 40897037
Alignment:
Q  49 gcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagta 131  Q
    ||||||||||||||| | | ||||||||||||| ||| ||||| |||||| |||||||  ||||||||| ||  |||||||||    
T  40897119 gcctaattaaattaacaagatttttaaaaagcttaagtttgacccatttattaaacgaactaggccgaaccgagcttttagta 40897037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 5927187 - 5927283
Alignment:
Q  49 gcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcatagg 145  Q
    ||||| |||||| |||||| ||||||||||||| ||| |||||  ||||| |||||| ||||||  |  ||||  |||||||| |||||||||||||    
T  5927187 gcctatttaaatgaataggttttttaaaaagctaaagtttgacctatttattaaacgggttaggttgggtcgggtttttagtagaccgagtcatagg 5927283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 53200064 - 53199961
Alignment:
Q  60 ttaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcataggtccttgacaggtgg 159  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||  ||||| |||||| ||||||| || ||    
T  53200064 ttaataggctttttaaaaagctcaagcttgactcatttattaaacgagataggcagagtcggacttttagtaagccgagccataggcccttgacgggcgg 53199965  T
Q  160 cctg 163  Q
    ||||    
T  53199964 cctg 53199961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 9798545 - 9798641
Alignment:
Q  49 gcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcatagg 145  Q
    ||||||||||||||| |||||||||||||||||||||||| | ||||||| |||||||| |||  |||| || |||||| |||  ||||||||||||    
T  9798545 gcctaattaaattaaaaggctttttaaaaagctcaagcttaaatcatttattaaacgagctagatcgaaccgaactttttgtaggccgagtcatagg 9798641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 44028256 - 44028314
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagt 108  Q
    ||||||||||| ||||||||||||||||||||||| |||||| |||||| |||||||||    
T  44028256 cctaattaaataaataggctttttaaaaagctcaaacttgacccatttattaaacgagt 44028314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 54739273 - 54739189
Alignment:
Q  30 ttttataatcataaaccatgcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggcc 114  Q
    |||||||| ||||||||  ||| | |||||| ||||| ||||||||||| |||| | |||||  ||||| |||||||||||||||    
T  54739273 ttttataagcataaacctagcccatttaaataaatagactttttaaaaaactcatgtttgacctatttattaaacgagttaggcc 54739189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 30491111 - 30491209
Alignment:
Q  55 ttaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcataggtccttgac 153  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||  ||||| ||||||||| ||||    
T  30491111 ttaagttaatagactttttaaaaagctcaagcttgactcatttattaaacaagttaggccgaaccggacttttagtaggccgagccataggtccctgac 30491209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 38855221 - 38855125
Alignment:
Q  49 gcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcatagg 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||  | | |||||||||  ||||| ||||||    
T  38855221 gcctaattaaattaataggctttttaaaaagctcaagcttgactcattttttaaacgagttaggtcgagcctggcttttagtaggccgagccatagg 38855125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 40355628 - 40355562
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccga 116  Q
    ||||||||||||| |||||||||||||||||||||| ||||| |||||| |||||||||||||||||    
T  40355628 cctaattaaattagtaggctttttaaaaagctcaagtttgacccatttattaaacgagttaggccga 40355562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 38119981 - 38120074
Alignment:
Q  52 taattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcatagg 145  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||| | | ||||||||  ||||||||| |||  ||||| ||||||    
T  38119981 taattaaattaataggctttttaaaaagctcaagcttgacccatttattaaatgggctaggccgagccggactttttgtaagccgagccatagg 38120074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 34640499 - 34640595
Alignment:
Q  49 gcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcatagg 145  Q
    ||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||| |||| |||| |||  ||| |||||||||  ||||| ||||||    
T  34640499 gcctatttaaattaataggctttttaaaaagctcaagtttgacttatttattaatcgagctaggtcgagccgggcttttagtaggccgagccatagg 34640595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 38064550 - 38064468
Alignment:
Q  49 gcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagta 131  Q
    |||||||||||||||||| |||||||||||| |||||||| ||| ||||| |||||||  ||||| |||||||  ||||||||    
T  38064550 gcctaattaaattaatagactttttaaaaagttcaagcttaacttatttattaaacgaactaggctgaatcgggtttttagta 38064468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 12069075 - 12069124
Alignment:
Q  49 gcctaattaaattaataggctttttaaaaagctcaagcttgactcattta 98  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||    
T  12069075 gcctaattaaattaataggctttttaaaaagctcaaacttaacccattta 12069124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 41533498 - 41533417
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagta 131  Q
    |||| ||||||||||| ||||||||||||||||||||||| |  ||||| |||||||  ||||||||  || ||||||||||    
T  41533498 cctatttaaattaataagctttttaaaaagctcaagcttggcctatttattaaacgatctaggccgagccgaacttttagta 41533417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 38669634 - 38669553
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagta 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||| |||||||||    
T  38669634 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttattaaacgagctaggccggaccgggcttttagta 38669553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 9857278 - 9857361
Alignment:
Q  30 ttttataatcataaaccatgcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggcc 114  Q
    |||||||| | ||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  9857278 ttttataagcctaaacccggcctaattaaattaatagg-tttttaaaaagctcaagcttgactcatttattaaacgagttaggcc 9857361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 8772545 - 8772601
Alignment:
Q  55 ttaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttag 111  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8772545 ttaaattaataggctttttaaaaagctcaagcttgactcatttattaaacgagttag 8772601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 51127104 - 51127198
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcatag 144  Q
    ||||||||||||||||| |||||||||||||| ||||||||| |||||| ||||||||||||||| ||  ||||| ||||||  ||||| |||||    
T  51127104 cctaattaaattaatagcctttttaaaaagcttaagcttgacacatttattaaacgagttaggccaaactggactattagtaggccgagccatag 51127198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 3289597 - 3289654
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgag 107  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||    
T  3289597 cctaattaaattaataggctttttaaaaagattaagcttgactcatttattaaacgag 3289654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 40707846 - 40707733
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcataggtcct 149  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||||| | ||||| |||||||||||  ||| |||| ||||  ||||| |||||| ||     
T  40707846 cctaaataaattgataggttttttaaaaagctcaagcttgactcattcattaaacaagttaggccgagccgggctttcagtaagccgagccataggcccc 40707747  T
Q  150 tgacaggtggcctg 163  Q
    |||| || ||||||    
T  40707746 tgacgggcggcctg 40707733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 13258855 - 13258751
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcataggtcct 149  Q
    |||||||||||||||||||||      |||| ||||||||||||||||| ||||||||||||||  |  ||| |||||||||  ||||| |||||| ||     
T  13258855 cctaattaaattaataggcttgagcctaagcccaagcttgactcatttattaaacgagttaggctaagccgggcttttagtaagccgagccataggcccc 13258756  T
Q  150 tgaca 154  Q
    |||||    
T  13258755 tgaca 13258751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 16576632 - 16576695
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggc 113  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  16576632 cctaattaaattaataggctttttataaagctcaagcttgactcatttattaaacgagttaggc 16576695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 29909389 - 29909313
Alignment:
Q  55 ttaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagta 131  Q
    ||||||||||||| ||||||||||||||| |||||||  ||||| ||||||||||||||||| || |||||||||||    
T  29909389 ttaaattaataggatttttaaaaagctcatgcttgacctatttattaaacgagttaggccgagtcagacttttagta 29909313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 29443052 - 29443113
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttag 111  Q
    |||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||    
T  29443052 cctaattaaattaataggctttttaaaaagttcaaacttgacccatttattaaacgagttag 29443113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 18311232 - 18311157
Alignment:
Q  56 taaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagta 131  Q
    ||||||||||  |||||||||||| |||||| ||| ||||||| |||||||||||||| ||  | |||||||||||    
T  18311232 taaattaataaactttttaaaaagttcaagcatgagtcatttattaaacgagttaggctgagacagacttttagta 18311157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 6636227 - 6636285
Alignment:
Q  55 ttaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggc 113  Q
    ||||||||||||||||||||||||||||| |||||||  ||||| |||| |||| ||||    
T  6636227 ttaaattaataggctttttaaaaagctcatgcttgacctatttattaaatgagtaaggc 6636285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 6628428 - 6628481
Alignment:
Q  55 ttaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagt 108  Q
    ||||||||||||||||||||||||||||| | |||||  ||||| |||| ||||    
T  6628428 ttaaattaataggctttttaaaaagctcatgtttgacctatttattaaatgagt 6628481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 9459229 - 9459296
Alignment:
Q  49 gcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccga 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||    
T  9459229 gcctaattaaatcaataggctttttaaaaagctcaagcttgactcatttattaaacaagctaggccga 9459296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 5738667 - 5738605
Alignment:
Q  49 gcctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttag 111  Q
    |||||||||||||||||| |||||||||||||||||  ||||| |||||| ||||||||||||    
T  5738667 gcctaattaaattaatagactttttaaaaagctcaaatttgacccatttattaaacgagttag 5738605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 12218623 - 12218684
Alignment:
Q  55 ttaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccga 116  Q
    |||||||||||| |||||||||||||| ||| |||||||||||| |||||||| ||||||||    
T  12218623 ttaaattaatagtctttttaaaaagcttaagtttgactcatttattaaacgagataggccga 12218684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 9626305 - 9626362
Alignment:
Q  55 ttaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttagg 112  Q
    ||||||||||| ||||||||||||||||| | |||||  ||||| |||||||||||||    
T  9626305 ttaaattaataagctttttaaaaagctcatgtttgacctatttattaaacgagttagg 9626362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 3525561 - 3525501
Alignment:
Q  55 ttaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccg 115  Q
    |||||||||||| ||||||||||| |||| || ||||  ||||| ||||||||||||||||    
T  3525561 ttaaattaatagactttttaaaaatctcatgcctgacctatttattaaacgagttaggccg 3525501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 4919773 - 4919710
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggc 113  Q
    |||| ||||||||||||||||||||||||| ||||| ||||  ||| || |||||||| |||||    
T  4919773 cctatttaaattaataggctttttaaaaagttcaagtttgatccatctattaaacgagctaggc 4919710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 3406226 - 3406170
Alignment:
Q  55 ttaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttag 111  Q
    ||||||||||||| ||||||||||||||| |||| ||  ||||| |||| |||||||    
T  3406226 ttaaattaataggttttttaaaaagctcatgcttaacctatttattaaatgagttag 3406170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 27157181 - 27157105
Alignment:
Q  55 ttaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagta 131  Q
    ||||||||||||||||||||||||||| | | ||| |  | ||| ||||||||||||| || |||| ||||| ||||    
T  27157181 ttaaattaataggctttttaaaaagcttatgtttggccgagttattaaacgagttaggtcggatcgaactttcagta 27157105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 16166327 - 16166213
Alignment:
Q  50 cctaattaaattaataggctttttaaaaa-gctcaagcttgactcatttactaaacgagttaggccgaatcggacttttagtataccgagtcataggtcc 148  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||  ||  |||||||||  ||||| |||||| ||    
T  16166327 cctaattaagttaataggctttttaaaaaagctcaagcttgactcatttattaaacaagctaggccgagccgagcttttagtaggccgagccataggccc 16166228  T
Q  149 ttgacaggtggcctg 163  Q
     |||| || ||||||    
T  16166227 ctgacgggcggcctg 16166213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 697884 - 697949
Alignment:
Q  52 taattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccgaa 117  Q
    |||||||||||||| | |||||||||||||||||||||||||||||| |||||||| ||| |||||    
T  697884 taattaaattaataagttttttaaaaagctcaagcttgactcatttattaaacgagctagaccgaa 697949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 15055935 - 15055995
Alignment:
Q  55 ttaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggccg 115  Q
    |||||||| ||| |||||||||||||||| |||||||  ||||| ||||||||||||||||    
T  15055935 ttaaattattagactttttaaaaagctcatgcttgacctatttattaaacgagttaggccg 15055995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 30591431 - 30591368
Alignment:
Q  50 cctaattaaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggc 113  Q
    |||| |||| |||||||||||||||||||||||||  ||||| |||||| |||||||| |||||    
T  30591431 cctatttaatttaataggctttttaaaaagctcaaatttgacccatttattaaacgagctaggc 30591368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 6138676 - 6138618
Alignment:
Q  56 taaattaataggctttttaaaaagctcaagcttgactcatttactaaacgagttaggcc 114  Q
    ||||||||||| |||||||||||||||| | |||||  ||||| |||||||||||||||    
T  6138676 taaattaatagactttttaaaaagctcatgtttgacctatttattaaacgagttaggcc 6138618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University