View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_106 (Length: 345)
Name: NF1139_high_106
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_106 |
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Alignment Details
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 42898422 - 42898371
Alignment:
| Q |
280 |
ccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggtt |
331 |
Q |
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| T |
42898422 |
ccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggtt |
42898371 |
T |
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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 42898546 - 42898504
Alignment:
| Q |
167 |
atctagctaggtacctgctcctatatcaatatatatcaatgta |
209 |
Q |
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| T |
42898546 |
atctagctaggtacctgctcctagatcaatatatatcaatgta |
42898504 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 327
Target Start/End: Original strand, 5788725 - 5788772
Alignment:
| Q |
280 |
ccttgagaagagggttccacagtcacatctgtattctcttgtgccaca |
327 |
Q |
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| T |
5788725 |
ccttgagaagagggttccacagtcacatctatattctctagtgccaca |
5788772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 327
Target Start/End: Original strand, 28496108 - 28496155
Alignment:
| Q |
280 |
ccttgagaagagggttccacagtcacatctgtattctcttgtgccaca |
327 |
Q |
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| T |
28496108 |
ccttgagaagagggtgccacagtcacatttgtattctcttgtaccaca |
28496155 |
T |
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