View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_109 (Length: 336)
Name: NF1139_high_109
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_109 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 35967279 - 35966969
Alignment:
| Q |
18 |
agtttgtgatgtattttgtgtcgctatgttgttttcttgaacttggttgatggatactttttaaatcctttccttacccattttgt--tcgttaaaattt |
115 |
Q |
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| T |
35967279 |
agtttgtgatgtattttgtgtcactatcttgttttcttgaacttggttgatggatattttttgaatcatttccttacccattttgtgtttgttaaaattt |
35967180 |
T |
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| Q |
116 |
atttgtcggcttgattaatatagtccattgtgacttcttcaaaaaataatttttagattaaattttcttcttaatattgtttatccttgtattgtttaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35967179 |
atttgtcggcttgattaatatagtccattgtgacttcttcaaaaaataatttttagattaaattttcttcttaatattgtttatccttgtattgtttaga |
35967080 |
T |
|
| Q |
216 |
gtgtttgcttgttcattgtaattattcatgcttgcgacatatatcttgtgtccatgtctctattttaatgaatttttctttgccttttctacaaaaacta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
35967079 |
gtgtttgcttgttcattgtaattattcatgcttgcgacatatatcttgtgtccatgtctccattttaatgaatttttctttggcttttctacaaaaacta |
35966980 |
T |
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| Q |
316 |
gcatagtatta |
326 |
Q |
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||||||||||| |
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| T |
35966979 |
gcatagtatta |
35966969 |
T |
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