View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_111 (Length: 333)
Name: NF1139_high_111
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_111 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 29 - 319
Target Start/End: Complemental strand, 3427920 - 3427630
Alignment:
| Q |
29 |
agctaaaccatggcggcatctatctcaccacttactttcattaactcaatcaatgtctcttccaactcaaaggtttccccttcttcctatccattttcac |
128 |
Q |
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| T |
3427920 |
agctaaaccatggcggcatctatctcaccccttgctttcattcactcaatcaatgtctcttccaactcaaagatttccccttcttcctatccattttcac |
3427821 |
T |
|
| Q |
129 |
aaaaacaacaaaaatattctagacatagaaaattaccaagacgccaagtgatcagattgagtggtaataatagtaaccaatacaaccctaaagaggaaca |
228 |
Q |
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| T |
3427820 |
aaaaacaacaaaaatattctagacatagaaaattatcaagacgccaagtgatcacattgagtggtaataatagtaaccaaaacaaccctaaagaggaaca |
3427721 |
T |
|
| Q |
229 |
agaaccacaaaacattgttgtaggaaataggaggaatgttctaattggccttggaggactttgtggtactttcaccactaacccttttgcc |
319 |
Q |
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| T |
3427720 |
agaaccacaaaacattgttgtaggaaataggaggaatgttctaattggccttggaggactttgtggtactttcaccactaacccttttgcc |
3427630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 116 - 319
Target Start/End: Complemental strand, 3434024 - 3433821
Alignment:
| Q |
116 |
tatccattttcacaaaaacaacaaaaatattctagacatagaaaattaccaagacgccaagtgatcagattgagtggtaataatagtaaccaatacaacc |
215 |
Q |
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||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| |
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| T |
3434024 |
tatccattttcacaaaaacaacagaaatcttctaaacatagaatattaccaagacgccaagtgatcacattgagtggtaataatggtaaccaaaacaacc |
3433925 |
T |
|
| Q |
216 |
ctaaagaggaacaagaaccacaaaacattgttgtaggaaataggaggaatgttctaattggccttggaggactttgtggtactttcaccactaacccttt |
315 |
Q |
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| T |
3433924 |
ctaaagaagaagaacaactacaaaacattgttgtaggaaataggaggaatgttctagttggccttggaggactttgtggtactttcaccgctaacccttt |
3433825 |
T |
|
| Q |
316 |
tgcc |
319 |
Q |
| |
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|||| |
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| T |
3433824 |
tgcc |
3433821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 116 - 319
Target Start/End: Original strand, 11896449 - 11896652
Alignment:
| Q |
116 |
tatccattttcacaaaaacaacaaaaatattctagacatagaaaattaccaagacgccaagtgatcagattgagtggtaataatagtaaccaatacaacc |
215 |
Q |
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|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |||||| |
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| T |
11896449 |
tatcaattttcacaaaaacaacaaaaatcttctaaacatagaaaattaccaagacgccaagtgatcacattcagtggtaatattagtaaccaaaacaacc |
11896548 |
T |
|
| Q |
216 |
ctaaagaggaacaagaaccacaaaacattgttgtaggaaataggaggaatgttctaattggccttggaggactttgtggtactttcaccactaacccttt |
315 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11896549 |
ctaaagaagaacaagaactacaaaacattgttgtaggaaataggagaaatgttctaattggccttggaggactttgtggtactttcaccactaacccttt |
11896648 |
T |
|
| Q |
316 |
tgcc |
319 |
Q |
| |
|
|||| |
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|
| T |
11896649 |
tgcc |
11896652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 116 - 319
Target Start/End: Original strand, 11911749 - 11911952
Alignment:
| Q |
116 |
tatccattttcacaaaaacaacaaaaatattctagacatagaaaattaccaagacgccaagtgatcagattgagtggtaataatagtaaccaatacaacc |
215 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |||||| |
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| T |
11911749 |
tatcaattttcacaaaaacaacaaaaatcttctaaacatagaaaattaccaagacgccaagtgatcacattcagtggtaatattagtaaccaaaacaacc |
11911848 |
T |
|
| Q |
216 |
ctaaagaggaacaagaaccacaaaacattgttgtaggaaataggaggaatgttctaattggccttggaggactttgtggtactttcaccactaacccttt |
315 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11911849 |
ctaaagaagaacaagaactacaaaacattgttgtaggaaataggagaaatgttctaattggccttggaggactttgtggtactttcaccactaacccttt |
11911948 |
T |
|
| Q |
316 |
tgcc |
319 |
Q |
| |
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|||| |
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|
| T |
11911949 |
tgcc |
11911952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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