View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_115 (Length: 325)
Name: NF1139_high_115
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_115 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 95 - 325
Target Start/End: Original strand, 33223945 - 33224176
Alignment:
| Q |
95 |
tgactaggcactaggttccctgtctttgagcagctcacaacgtttggtgcttatgcgagcattaggtacgttttgggcggtctgaaactgtgatttgtgc |
194 |
Q |
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|||||||||||||||||||||||||| |||||| ||| |||||| ||||| ||| || |||||| |||||||||||||||||||||| |||||||||||| |
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| T |
33223945 |
tgactaggcactaggttccctgtcttcgagcagttcaaaacgttcggtgcctatacgggcattatgtacgttttgggcggtctgaaattgtgatttgtgc |
33224044 |
T |
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| Q |
195 |
gattttctcatgtttttgtgttccaatagttgta-tcccttcatagatttgattaggatgttttgtttcattgttattacttaactgaaagtgaaccaac |
293 |
Q |
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| T |
33224045 |
gattttctcatgtttttgtgttgcaatagcagtattcccttcatagatttgattatgatgttttgtttcattgttattacttaactcaaagtgaaccaac |
33224144 |
T |
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| Q |
294 |
acatctcttgattaaaaatccttatttcatat |
325 |
Q |
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| T |
33224145 |
acatctcttaattaaaaatccttatttcatat |
33224176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 325
Target Start/End: Complemental strand, 8450876 - 8450713
Alignment:
| Q |
163 |
cgttttgggcggtctgaaactgtgatttgtgcgattttc-tcatgtttttgtgttccaatagttgtatcccttcatagatttgattaggatgttttgttt |
261 |
Q |
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| T |
8450876 |
cgttctgggcagtctgaatttgtgttttttgcggttttcctcgtgtttttggttttcaatggttgtatcccttcatagattagattatgatgtattattt |
8450777 |
T |
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| Q |
262 |
cattgttattacttaactgaaagtgaaccaacacatctcttgattaaaaatccttatttcatat |
325 |
Q |
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| T |
8450776 |
cattgttattatttaacttgaagtgaacctacacatctcttgattcaaaattctgattgcatat |
8450713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 304
Target Start/End: Complemental strand, 3368707 - 3368607
Alignment:
| Q |
204 |
atgtttttgtgttccaatagttgtatcccttcatagatttgattaggatgttttgtttcattgttattacttaactgaaagtgaaccaacacatctcttg |
303 |
Q |
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| T |
3368707 |
atgtttttggattccaatggttgtaactcttcataaacttgattgaaatgtattgtttcattgttattacaaaactgtaagtgaaccaatacatttcttg |
3368608 |
T |
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| Q |
304 |
a |
304 |
Q |
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| T |
3368607 |
a |
3368607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 304
Target Start/End: Original strand, 13311349 - 13311465
Alignment:
| Q |
188 |
tttgtgcgattttctcatgtttttgtgttccaatagttgtatcccttcatagatttgattaggatgttttgtttcattgttattacttaactgaaagtga |
287 |
Q |
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|||||| | |||||| ||||||||| |||| ||| |||||| ||||| ||||||||| | || || || |||||||||||||||||||| | |||||| |
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| T |
13311349 |
tttgtgtggttttctaatgtttttgggttcaaatggttgtacaccttcgaagatttgatcaagacgtgttatttcattgttattacttaaccggaagtga |
13311448 |
T |
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| Q |
288 |
accaacacatctcttga |
304 |
Q |
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| T |
13311449 |
agaaacaaatctcttga |
13311465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 311
Target Start/End: Original strand, 44680551 - 44680680
Alignment:
| Q |
183 |
tgtgatttgtgcgattttctcatgtttttgtgttccaatagttgtatcccttcatagatttga--ttaggatgttttgtttcattgttattacttaactg |
280 |
Q |
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| T |
44680551 |
tgtgttttgtgcatttttctcatgttttagggttccaatggtcgtaactctttatagatttgagattgaaatgtattgtttcattgttac-acataactg |
44680649 |
T |
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| Q |
281 |
aaagtgaaccaacacatctcttgattaaaaa |
311 |
Q |
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| T |
44680650 |
aaagtgaattaatacatctcttgaataaaaa |
44680680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 1986394 - 1986478
Alignment:
| Q |
205 |
tgtttttgtgttccaatagttgtatcccttcatagatttgattaggatgttttgtttcattgttattacttaactgaaagtgaac |
289 |
Q |
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|||||||| ||||||||||| ||| |||| || |||||||| |||| |||||||||||||||||| ||||| |||||||| |
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| T |
1986394 |
tgtttttgggttccaatagtagtaattcttcgtaaatttgattgtaatgtattgtttcattgttattacataactataagtgaac |
1986478 |
T |
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