View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_116 (Length: 321)
Name: NF1139_high_116
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_116 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 24 - 293
Target Start/End: Original strand, 12860954 - 12861222
Alignment:
| Q |
24 |
gaacgagagacctatagccctttgctaaccatagtatgctcaacatagtgattagtgatagaaagcagaaacatagccaattggcnnnnnnnnnnnnnnn |
123 |
Q |
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| T |
12860954 |
gaacgagagacctatagccctttgctaaccgtagtatgctcaacatagtgattagtgatagaaagcagaaacatagccaattggcaacaaaaaaaaaaaa |
12861053 |
T |
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| Q |
124 |
nnntcatagataattaaaccccaatattaaaagtaaatgcaactttattttacattttaatataaattaaatttnnnnnnnctgtggaaactctgaaacg |
223 |
Q |
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| T |
12861054 |
aaaacatagataattaaaccccaatattaaaagtaaatgcaactttattttacattttaatataaattaaa-taaaaaaaactgtggaaactctgaaacg |
12861152 |
T |
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| Q |
224 |
aagaaattggttgttgtaaccgttttataaatgaatcctggcgcgggaaattccaaattgcgctaaccgt |
293 |
Q |
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| T |
12861153 |
aagaaattggttgttacaaccgttttataaataaatcctggcgcgggaaattccaaattgctctaaccgt |
12861222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 127 - 293
Target Start/End: Complemental strand, 12844459 - 12844295
Alignment:
| Q |
127 |
tcatagataattaaaccccaatattaaaagtaaatgcaactttattttacattttaatataaattaaatttnnnnnnnctgtggaaactctgaaacgaag |
226 |
Q |
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| T |
12844459 |
tcatagacaattaaaccccaatattaaaagtaaatgcgactttattttacattttaatataaattaaat--aaaaaaactgtggaaactctgaaacgaag |
12844362 |
T |
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| Q |
227 |
aaattggttgttgtaaccgttttataaatgaatcctggcgcgggaaattccaaattgcgctaaccgt |
293 |
Q |
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| T |
12844361 |
aaattggttgttgtaaccgttttataaatgaatcctggcgcgggaaattccaaattgcgctaaccgt |
12844295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 12844555 - 12844507
Alignment:
| Q |
22 |
atgaacgagagacctatagccctttgctaaccatagtatgctcaacata |
70 |
Q |
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|||||| | |||||||||||| | |||||||| |||||||||||||||| |
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| T |
12844555 |
atgaaccaaagacctatagccttgtgctaaccgtagtatgctcaacata |
12844507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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