View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_118 (Length: 319)
Name: NF1139_high_118
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_118 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 3376553 - 3376768
Alignment:
| Q |
20 |
agaagcaaaggggtcgccctagaaagtacagtccagacgggtctttaagcttggcgatacctcccaagccaacatctagctccatcagcgaagctgctaa |
119 |
Q |
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| T |
3376553 |
agaagaaaaggggtcgccctagaaagtacagaccagacgggtctttaagcttggcgatacctcccaagccaaaatctagctccattggcgaagctgctaa |
3376652 |
T |
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| Q |
120 |
gttcgagttggagaatccaggtagctaagaaattctctttctttttgatcttgtgcatttcttgattgaatgcttgtgaagaagtatcaagaaagaatag |
219 |
Q |
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| T |
3376653 |
gttcgagttggagaatccaggtagccaagaaattctctttctttttgatcttgtgcatttcttgattgaatgcttgtgaaggagtatcaagaaagaatag |
3376752 |
T |
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| Q |
220 |
tgcattttgttgttcg |
235 |
Q |
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|||||||||||||||| |
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| T |
3376753 |
tgcattttgttgttcg |
3376768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 3401617 - 3401741
Alignment:
| Q |
20 |
agaagcaaaggggtcgccctagaaagtacagtccagacgggtctttaagcttggcgatacctcccaagccaacatctagctccatcagcgaagctgctaa |
119 |
Q |
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| T |
3401617 |
agaagaaaaggggccgccctagaaagtacagaccagacgggtctttaagcttggcgatacctcccaagccaacatctagctccatcggcgaagctgctaa |
3401716 |
T |
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| Q |
120 |
gttcgagttggagaatccaggtagc |
144 |
Q |
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| T |
3401717 |
gttcgagttggagaatccaggtagc |
3401741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 3367971 - 3368142
Alignment:
| Q |
42 |
aaagtacagtccagacgggtctttaagcttggcgatacctcccaagccaacatctagctccatcagcgaagctgctaagttcgagttggagaatccaggt |
141 |
Q |
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| T |
3367971 |
aaagtacaaaccagacaggtctttgaactcggtgatgcctccgaagccaacatctagctccattagtaaagctggcaaaagcacgttggagaatacaggt |
3368070 |
T |
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| Q |
142 |
agctaagaaattctctttctttttgatcttgtgcatttcttgattga-atgcttgtgaagaagtatcaagaa |
212 |
Q |
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| T |
3368071 |
aaccaagaaattctctttctttgtgatcatgtacgtgtcttgattgagatgcttgtgaaggagtatcaagaa |
3368142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 3371995 - 3371875
Alignment:
| Q |
85 |
aagccaacatctagctccatcagcgaagctgctaagttcgagttggagaatccaggtagctaagaaattctctttctttttgatcttgtgcatttcttga |
184 |
Q |
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| T |
3371995 |
aagccaacatctagctccattggcaaatctgccaaatttgagttggagaaaccaggtaactaagaaactctctttgtc----atcatgtgcgtttcttga |
3371900 |
T |
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| Q |
185 |
ttgaatgcttgtgaagaagtatcaa |
209 |
Q |
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||||||| ||||| || |||||||| |
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| T |
3371899 |
ttgaatggttgtgcagtagtatcaa |
3371875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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