View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_high_125 (Length: 307)

Name: NF1139_high_125
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_high_125
NF1139_high_125
[»] chr8 (14 HSPs)
chr8 (1-305)||(39188067-39188371)
chr8 (176-300)||(3160317-3160444)
chr8 (28-103)||(2875793-2875868)
chr8 (176-300)||(2889285-2889412)
chr8 (176-300)||(3145450-3145577)
chr8 (28-103)||(2795862-2795937)
chr8 (28-90)||(3144920-3144982)
chr8 (28-103)||(3159501-3159576)
chr8 (176-300)||(2874611-2874736)
chr8 (33-118)||(4416030-4416116)
chr8 (174-263)||(4416877-4416966)
chr8 (28-65)||(2890311-2890348)
chr8 (208-300)||(2797416-2797510)
chr8 (30-66)||(3494363-3494399)


Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 39188371 - 39188067
Alignment:
Q  1 aaaaggggaatcattgcactgacgtcgtgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccact 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188371 aaaaggggaatcattgcaccgacgtcgtgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccact 39188272  T
Q  101 acagtgcgttaggacactacacttgggcctatggtccatggtgagccaagcattgggcaaatcttgttagagttggttaggagcatggtgctttgtttag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188271 acagtgcgttaggacactacacttgggcctatggtccatggtgagccaagcattgggcaaatcttgttagagttggttaggagcatggtgctttgtttag 39188172  T
Q  201 gagtctttgactttggtttacctctttgattttgttattccaccattgtggagcctctacgctaatatctatcatttgataatatacaacattaccttgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188171 gagtctttgactttggtttacctctttgattttgttattccaccattgtggagcctctacgctaatatctatcatttgataatatacaacattaccttgt 39188072  T
Q  301 ctgtg 305  Q
     ||||    
T  39188071 ttgtg 39188067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 3160317 - 3160444
Alignment:
Q  176 gttaggagcatggtgctttgtttaggagtctttgactttggtttacctctttgattttgttattccaccattgtggagcctctacgctaatatctatcat 275  Q
    ||||||||||| ||||| | ||||||||||||||||| ||||||| |||||| ||| |||||||||||| |||| |||||||||| || |||| ||||||    
T  3160317 gttaggagcatagtgctctctttaggagtctttgactctggtttatctctttcattctgttattccacccttgtagagcctctacactcatatttatcat 3160416  T
Q  276 ttga---taatatacaacattaccttgt 300  Q
    ||||   |||||||||| ||||||||||    
T  3160417 ttgatagtaatatacaaaattaccttgt 3160444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 2875868 - 2875793
Alignment:
Q  28 tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca 103  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||    
T  2875868 tgaatatgcaagagcttctaaaagatttcagaaggtaaccaggttacattaatatatttcaccatcatccactaca 2875793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 2889412 - 2889285
Alignment:
Q  176 gttaggagcatggtgctttgtttaggagtctttgactttggtttacctctttgattttgttattccaccattgtggagcctctacgctaatatctatcat 275  Q
    ||||||||||| ||||| | ||||||||||||||||| ||||||| || ||| ||| |||||||||||| |||| |||||||||| || |||| ||||||    
T  2889412 gttaggagcatagtgctctctttaggagtctttgactctggtttatctatttcattctgttattccacccttgtagagcctctacactcatatttatcat 2889313  T
Q  276 ttga---taatatacaacattaccttgt 300  Q
    ||||   |||||||||| ||||||||||    
T  2889312 ttgatagtaatatacaaaattaccttgt 2889285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 300
Target Start/End: Original strand, 3145450 - 3145577
Alignment:
Q  176 gttaggagcatggtgctttgtttaggagtctttgactttggtttacctctttgattttgttattccaccattgtggagcctctacgctaatatctatcat 275  Q
    ||||||||||| ||||| | ||||||||||||||||| ||||||| || ||| ||| |||||||||||| |||| |||||||||| || |||| ||||||    
T  3145450 gttaggagcatagtgctctctttaggagtctttgactctggtttatctatttcattctgttattccacccttgtagagcctctacactcatatttatcat 3145549  T
Q  276 ttga---taatatacaacattaccttgt 300  Q
    ||||   |||||||||| ||||||||||    
T  3145550 ttgatagtaatatacaaaattaccttgt 3145577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 2795862 - 2795937
Alignment:
Q  28 tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca 103  Q
    |||||||||||||||||||||||||| | |||||||||||| |||||||| |||||||||||| ||||||||||||    
T  2795862 tgaatatgcaagagcttctaaaagatatcagaaggtaaccatgttacattaatatatttcaccatcatccactaca 2795937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 3144920 - 3144982
Alignment:
Q  28 tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcacc 90  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||    
T  3144920 tgaatatgcaagagcttctaaaagatttcagaaggtaaccaggttacattaatatatttcacc 3144982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 3159501 - 3159576
Alignment:
Q  28 tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca 103  Q
    |||||||||||||||||| || |||||| |||||||||||| || ||||| |||||||||||| ||||||||||||    
T  3159501 tgaatatgcaagagcttccaagagatttcagaaggtaaccaggtaacattaatatatttcaccatcatccactaca 3159576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 176 - 300
Target Start/End: Complemental strand, 2874736 - 2874611
Alignment:
Q  176 gttaggagcatggtgctttgtttaggagtctttgactttggtttacctctttgattttgttattccaccattgtggagcctctacgctaatatctatcat 275  Q
    |||| |||||| ||||| | ||||||||||||||||| ||||||| ||||   ||| |||||||||||| ||||  |||||||||||| |||| ||||||    
T  2874736 gttatgagcatagtgctctctttaggagtctttgactctggtttatctctc--attctgttattccacccttgtatagcctctacgctcatatttatcat 2874639  T
Q  276 ttga---taatatacaacattaccttgt 300  Q
    ||||   |||||||||| ||||||||||    
T  2874638 ttgatcgtaatatacaaaattaccttgt 2874611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 4416030 - 4416116
Alignment:
Q  33 atgcaagagcttctaaaagatttgagaaggtaaccaag-ttacattgatatatttcaccctcatccactacagtgcgttaggacact 118  Q
    ||||||| |||||||||||||||  |||||||||  || ||||||||||||||||||||||||||||||||| || | |||||||||    
T  4416030 atgcaagggcttctaaaagatttatgaaggtaactgaggttacattgatatatttcaccctcatccactacaatgtgataggacact 4416116  T

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Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 4416877 - 4416966
Alignment:
Q  174 tggttaggagcatggtgctttgtttaggagtctttgactttggtttacctctttgattttgttattccaccattgtggagcctctacgct 263  Q
    |||||||||| |  ||||| |||||||||||||| |||  ||||||| |||||| |||||||||||||| | |||| |||||||| ||||    
T  4416877 tggttaggagtagagtgctctgtttaggagtcttggaccctggtttatctctttcattttgttattccagcgttgtagagcctctgcgct 4416966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 2890348 - 2890311
Alignment:
Q  28 tgaatatgcaagagcttctaaaagatttgagaaggtaa 65  Q
    |||||||||||||||||||||||||||| |||||||||    
T  2890348 tgaatatgcaagagcttctaaaagatttcagaaggtaa 2890311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 2797416 - 2797510
Alignment:
Q  208 tgactttggtttacctctttgattttgttattccaccattgtggagcctctacgctaatatctatcatttga---taatatacaacattaccttgt 300  Q
    ||||| ||||||| |||||| ||| |||||||||||| || | ||||||||||  | |||| ||||||||||   |||||||||| ||||||||||    
T  2797416 tgactctggtttatctctttcattctgttattccaccctt-tagagcctctacattcatatttatcatttgatggtaatatacaaaattaccttgt 2797510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 3494399 - 3494363
Alignment:
Q  30 aatatgcaagagcttctaaaagatttgagaaggtaac 66  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  3494399 aatatgcaaaagcttctaaaagatatgagaaggtaac 3494363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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