View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_13 (Length: 591)
Name: NF1139_high_13
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 30 - 510
Target Start/End: Complemental strand, 15394577 - 15394097
Alignment:
| Q |
30 |
caaattaaccaaaaagttggaaaacaatatataccttgaccattgtcatttgctcttaatacaatgaaaacatatttgagcagcggcacaagagtaagag |
129 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15394577 |
caaattaaccaaaatgttggaaaacaatatataccttgaccattgtcatttgctcttaatacaatgaaaacatatttgagcagtggcacaagagtaagag |
15394478 |
T |
|
| Q |
130 |
agtatatgatcaaagaaagagctccaatcactttctccgaatcatcaactccataaggaaatgtgttatagaaaacgtataagggtgaagttcccagatc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15394477 |
agtatatgatcaaagaaagagctccaatcactttctccgaatcatcaactccataaggaaatgtgttatagaaaacgtataagggtgaagttcccagatc |
15394378 |
T |
|
| Q |
230 |
tccataaacgacaccaagactttgatatgccagtcgtagaagcaacagcacagaaaacttctgaaacaaatcaaaataacatagatcgaaaaattactta |
329 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15394377 |
tccataaacgacaccaagactttgatatgccagttgtagaagcaacagcgcagaaaacttctgaaacaaatcaaattaacatagatcgaaaaattactta |
15394278 |
T |
|
| Q |
330 |
aaatcacttaaaagacatgttgtagacatcaaaatttcaacgttgcaaattgcagtatcctatgtaaacaaaatagaattcattgcatcatactttttct |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15394277 |
aaatcacttaaaagacatgttgtagacatcaaaatttcaaagttgcaaattgcagtatcctatgtaaacaaaatagaattcattgcatcatactttttct |
15394178 |
T |
|
| Q |
430 |
ctgtacatatttttgagccttcctgcttctgcatccattggctggtcgaatttctgttgcaaatcccacatactacctttg |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15394177 |
ctgtacatatttttgagccttcctgcttctgcatccattggctggtcaaatttctgttgcaaatcccacatactacctttg |
15394097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 30 - 510
Target Start/End: Complemental strand, 15386143 - 15385662
Alignment:
| Q |
30 |
caaattaaccaaaaagttggaaaacaatatataccttgaccattgtcatttgctcttaatacaatgaaaacatatttgagcagcggcacaagagtaagag |
129 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15386143 |
caaattaaccaaacagttggaaaacaatacataccttgaccattgtcgtttgctcttaatacaatgaaaacgtatttgagcagcggcacaagagtaagag |
15386044 |
T |
|
| Q |
130 |
agtatatgatcaaagaaagagctccaatcactttctccgaatcatcaactccataaggaaatgtgttatagaaaacgtataagggtgaagttcccagatc |
229 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||| |
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| T |
15386043 |
agtatatgatcaaagaaagagcgccaatcactttctccggatcatcaactccacgaggaaatgtgttatagaaaacatataagggcgaagttcccaaatc |
15385944 |
T |
|
| Q |
230 |
tccataaacgacaccaagactttgatatgccagtcgtagaagcaacagcacagaaaacttctgaaacaaatcaaaataacatagatcga-aaaattactt |
328 |
Q |
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||| ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15385943 |
tccgtaaactacaccaagactttgatatgctagtcgtagaagcaacagcgcagaaaacttctgaaacaaatcaaaataacatagatcgaaaaaattactt |
15385844 |
T |
|
| Q |
329 |
aaaatcacttaaaagacatgttgtagacatcaaaatttcaacgttgcaaattgcagtatcctatgtaaacaaaatagaattcattgcatcatactttttc |
428 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15385843 |
aaaatcacttaacagacatgtcgtagacatcaaaatttcaaagttgcaaattgcagtttcctatgtaaacaaaatagaattcattgcatcatactttttc |
15385744 |
T |
|
| Q |
429 |
tctgtacatatttttgagccttcctgcttctgcatccattggctggtcgaatttctgttgcaaatcccacatactacctttg |
510 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||| |
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| T |
15385743 |
tctgtacatatttctgagccttcctgcttctgcatccattggctggtcaagtttctgttccaaatcccacatactgcctttg |
15385662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 49 - 294
Target Start/End: Original strand, 38669169 - 38669414
Alignment:
| Q |
49 |
gaaaacaatatataccttgaccattgtcatttgctcttaatacaatgaaaacatatttgagcagcggcacaagagtaagagagtatatgatcaaagaaag |
148 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||| || ||||| | |||||||||||| || ||||||||||| |
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| T |
38669169 |
gaaaacaatcgataccttgtccattgtcatttgctcttaacacaataaaaacatatttgaggagaggcaccaaagtaagagagtagataatcaaagaaag |
38669268 |
T |
|
| Q |
149 |
agctccaatcactttctccgaatcatcaactccataaggaaatgtgttatagaaaacgtataagggtgaagttcccagatctccataaacgacaccaaga |
248 |
Q |
| |
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|||||||| |||| ||| ||| | || || | |||||| | || |||||||| || ||||||||||| |||| |||||||||||| || |||||| |
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| T |
38669269 |
agctccaagtacttcctcttcatctttcacgccgttcggaaatatattgtagaaaacatacaagggtgaagtgcccaaatctccataaaccacgccaaga |
38669368 |
T |
|
| Q |
249 |
ctttgatatgccagtcgtagaagcaacagcacagaaaacttctgaa |
294 |
Q |
| |
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|| |||||||| || || |||| ||||| ||||||| ||||||| |
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| T |
38669369 |
ctctgatatgcaagccgcagaatcaacaatgcagaaaatttctgaa |
38669414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 416 - 510
Target Start/End: Original strand, 38669678 - 38669772
Alignment:
| Q |
416 |
atcatactttttctctgtacatatttttgagccttcctgcttctgcatccattggctggtcgaatttctgttgcaaatcccacatactacctttg |
510 |
Q |
| |
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||||||||||||||||||||||||| |||| |||||||| ||| | ||||| |||||||| | ||||| | |||||||||||||||||||||| |
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| T |
38669678 |
atcatactttttctctgtacatattcctgagtcttcctgcctcttcctccataggctggtcaagcttctgatccaaatcccacatactacctttg |
38669772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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