View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_high_135 (Length: 292)

Name: NF1139_high_135
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_high_135
NF1139_high_135
[»] chr5 (8 HSPs)
chr5 (11-263)||(34230940-34231192)
chr5 (61-215)||(34239031-34239185)
chr5 (14-263)||(42125219-42125477)
chr5 (42-257)||(42130481-42130696)
chr5 (19-263)||(41711912-41712158)
chr5 (100-262)||(41570143-41570305)
chr5 (71-157)||(42118703-42118789)
chr5 (175-258)||(42118787-42118871)
[»] chr6 (1 HSPs)
chr6 (42-257)||(25521154-25521375)
[»] chr3 (1 HSPs)
chr3 (42-263)||(8524705-8524932)
[»] chr2 (1 HSPs)
chr2 (19-254)||(12250054-12250289)
[»] chr4 (1 HSPs)
chr4 (14-257)||(11120005-11120245)
[»] chr1 (1 HSPs)
chr1 (14-130)||(15590822-15590938)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 34231192 - 34230940
Alignment:
Q  11 cagagagaaagattgattgaagagcaagtttatggagtttggtcttatcaaagacatgtctgtataatccaaaaacagctcccttaaacttgttgcgttt 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34231192 cagagagaaagatcgattgaagagcaagtttatggagtttggtcttatcaaagacatgtctgtataatccaaaaacagctcccttaaacttgttgcgttt 34231093  T
Q  111 tgcacaagtctcttcaaggtagtctctttccaaactaacttatcattcccagcaagatgaagtgattgtaatttggaaaggtccgagatttgagaaggaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34231092 tgcacaagtctcttcaaggtagtctctttccaaactaacttatcattcccagaaagatgaagtgattgtaatttggaaaggtccgagatttgagaaggaa 34230993  T
Q  211 tttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaac 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34230992 tttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaac 34230940  T

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Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 34239185 - 34239031
Alignment:
Q  61 aagacatgtctgtataatccaaaaacagctcccttaaacttgttgcgttttgcacaagtctcttcaaggtagtctctttccaaactaacttatcattccc 160  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| || || |||    
T  34239185 aagacatatctgaataatccaaaaacagctcccttaaacttgttgcgttttgcacaagtctctttaaggtggtctctttccaaactaactcataatgccc 34239086  T
Q  161 agcaagatgaagtgattgtaatttggaaaggtccgagatttgagaaggaatttca 215  Q
    || |||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  34239085 agaaagatgaagtgattgtaatttggaaaggtatgagatttgagaaggaatttca 34239031  T

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Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 42125219 - 42125477
Alignment:
Q  14 agagaaagattgattgaagagcaagtttatggagtttggtcttatcaaagacatgtctgtataatccaaaaacagctcccttaaacttgttgcgttttgc 113  Q
    |||| ||||||| |||||||||||    |||||||||||||||||  ||||||| | ||||| |||||||||||||||||| ||| ||||||| |||||     
T  42125219 agaggaagattggttgaagagcaaagcaatggagtttggtcttattgaagacatatttgtattatccaaaaacagctccctcaaatttgttgcattttga 42125318  T
Q  114 acaagtctcttcaaggtagtctctttccaaactaacttatc---------attcccagcaagatgaagtgattgtaatttggaaaggtccgagatttgag 204  Q
    |||| |||||||||||| ||||||||||||||||||| |||         ||  ||||  ||||||||||||||||||||||||||||  |||||||||     
T  42125319 acaaatctcttcaaggtcgtctctttccaaactaactgatcataaccggtatatccagagagatgaagtgattgtaatttggaaaggtgtgagatttgaa 42125418  T
Q  205 aaggaatttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaac 263  Q
      ||||||||| ||| |||||||| |  ||||||||| ||||||| |||||||||||||    
T  42125419 ttggaatttcacctttaaagaaactacgagacaagtcaagatgtgcaagactcataaac 42125477  T

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Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 42 - 257
Target Start/End: Original strand, 42130481 - 42130696
Alignment:
Q  42 atggagtttggtcttatcaaagacatgtctgtataatccaaaaacagctcccttaaacttgttgcgttttgcacaagtctcttcaaggtagtctctttcc 141  Q
    |||||||||||||||||  ||||||| |||||  | |||||||||||||| | ||||  |||||| |||||||  || ||||||||||||||||||||||    
T  42130481 atggagtttggtcttattgaagacatatctgtggagtccaaaaacagctctcgtaaatctgttgcattttgcaacagcctcttcaaggtagtctctttcc 42130580  T
Q  142 aaactaacttatcattcccagcaagatgaagtgattgtaatttggaaaggtccgagatttgagaaggaatttcatcttgaaagaaacaagaagacaagtc 241  Q
    ||| ||| | || |||  |||  ||||||||||||||||||||||| ||||  ||||||||||  ||||||||| |||  |||  || |  |||||||||    
T  42130581 aaattaagtcataattttcagagagatgaagtgattgtaatttggataggtgagagatttgagttggaatttcaccttctaagttactatcagacaagtc 42130680  T
Q  242 gagatgtgtaagactc 257  Q
     |||||||||||||||    
T  42130681 aagatgtgtaagactc 42130696  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 41712158 - 41711912
Alignment:
Q  19 aagattgattgaagagcaagtttatggagtttggtcttatcaaagacatgtctgtataatccaaaaacagctcccttaaactt--gttgcgttttgcaca 116  Q
    |||| |||||||||||||| |  |||||||||||| ||||  ||||||| ||||| | ||||||||| || |  ||||||  |  ||||||||||||| |    
T  41712158 aagaatgattgaagagcaaatccatggagtttggttttattgaagacatatctgtgtcatccaaaaatagtttgcttaaatattagttgcgttttgcata 41712059  T
Q  117 agtctcttcaaggtagtctctttccaaactaacttatcattcccagcaagatgaagtgattgtaatttggaaaggtccgagatttgagaaggaatttcat 216  Q
    || || || ||||| || |||||||||||||| | || ||||  ||  ||||||||||||||||||||||| ||||  |||||||||   |||||||||     
T  41712058 agcctatttaaggtggtttctttccaaactaattcataattctgagagagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcac 41711959  T
Q  217 cttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaac 263  Q
    ||| |||| ||| | |||||| ||| ||||||| |||||||| ||||    
T  41711958 cttcaaagtaactataagacatgtcaagatgtgcaagactcaaaaac 41711912  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 262
Target Start/End: Complemental strand, 41570305 - 41570143
Alignment:
Q  100 ttgttgcgttttgcacaagtctcttcaaggtagtctctttccaaactaacttatcattcccagcaagatgaagtgattgtaatttggaaaggtccgagat 199  Q
    |||||||||||||||||||||||||||| || || |||||||||  |||||  |||||   || |||| ||||||||  |||||   ||||||  |||||    
T  41570305 ttgttgcgttttgcacaagtctcttcaaagtggtttctttccaacttaactcgtcatttttagaaagacgaagtgatgttaattgcaaaaggtatgagat 41570206  T
Q  200 ttgagaaggaatttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaa 262  Q
    ||||| ||||| |||  ||||||||  ||| ||||||||||| ||||||||||||||| ||||    
T  41570205 ttgaggaggaacttcgccttgaaagttacacgaagacaagtcaagatgtgtaagactcttaaa 41570143  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 42118703 - 42118789
Alignment:
Q  71 tgtataatccaaaaacagctcccttaaacttgttgcgttttgcacaagtctcttcaaggtagtctctttccaaactaacttatcatt 157  Q
    ||||| ||||||||||| |||||| ||| ||||||| ||||| |||| |||||||||||| ||||||||||||||||| | ||||||    
T  42118703 tgtattatccaaaaacatctccctcaaatttgttgcattttgaacaaatctcttcaaggtcgtctctttccaaactaattcatcatt 42118789  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 42118787 - 42118871
Alignment:
Q  175 attgtaatttggaaaggtccgagatttgagaaggaatttcatcttgaaagaaa-caagaagacaagtcgagatgtgtaagactca 258  Q
    ||||||||||||| | ||  ||||||||||  ||||||||| ||| ||||||| | |  ||||||||| ||||||||||||||||    
T  42118787 attgtaatttggataagtgtgagatttgagttggaatttcacctttaaagaaaactatgagacaagtcaagatgtgtaagactca 42118871  T

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Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 42 - 257
Target Start/End: Complemental strand, 25521375 - 25521154
Alignment:
Q  42 atggagtttggtcttatcaaagacatgtctgtataatccaaaaacagctcccttaaacttgttgcgttttgcacaagtctcttcaaggtagtctctttcc 141  Q
    |||||||||||||||||  ||||||| | ||||||||||||||||| ||||  |||| ||||||| ||||||| ||| ||||| ||| | ||||||||||    
T  25521375 atggagtttggtcttatagaagacatatttgtataatccaaaaacaactcctgtaaatttgttgcattttgcaaaagcctctttaagatggtctctttcc 25521276  T
Q  142 aaact--aacttatc----attcccagcaagatgaagtgattgtaatttggaaaggtccgagatttgagaaggaatttcatcttgaaagaaacaagaaga 235  Q
    |||||  ||| || |    || ||||| |||||||||||||||||||||||||||||  ||||||||||  ||||||| | ||| |||||||| |  |||    
T  25521275 aaactaaaacataaccaaaatacccagaaagatgaagtgattgtaatttggaaaggtgtgagatttgagttggaattttacctttaaagaaactaccaga 25521176  T
Q  236 caagtcgagatgtgtaagactc 257  Q
    |||||  |||||||||||||||    
T  25521175 caagtaaagatgtgtaagactc 25521154  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 263
Target Start/End: Original strand, 8524705 - 8524932
Alignment:
Q  42 atggagtttggtcttatcaaagacatgtctgtataatccaaaaacagctcccttaaacttgttgcgttttgcacaagtctcttcaaggtagtctctttcc 141  Q
    ||||||||||||||||   ||||||  ||||||| ||||||||||| |||||| ||  |||||||||||||||||||||||||||||||  |||||||||    
T  8524705 atggagtttggtcttaatgaagacaaatctgtatcatccaaaaacaactccctcaagtttgttgcgttttgcacaagtctcttcaaggtgctctctttcc 8524804  T
Q  142 aaactaactt------atcattcccagcaagatgaagtgattgtaatttggaaaggtccgagatttgagaaggaatttcatcttgaaagaaacaagaaga 235  Q
    ||||||| ||      || |  |||||  ||||||||||||||||||||| ||||||  ||||||||||  ||||||||| ||| || | ||| |  |||    
T  8524805 aaactaaattgtattgataagacccagagagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaggtaactatgaga 8524904  T
Q  236 caagtcgagatgtgtaagactcataaac 263  Q
    |||||| |||||||| ||||||| ||||    
T  8524905 caagtcaagatgtgtgagactcaaaaac 8524932  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 12250054 - 12250289
Alignment:
Q  19 aagattgattgaagagcaagtttatggagtttggtcttatcaaagacatgtctgtataatccaaaaacagctcccttaaacttgttgcgttttgcacaag 118  Q
    |||||| ||||||||| || |||||||||||| |||||||  ||||||||| ||| | ||  ||||| |||||||| ||| ||||||| ||||||||||     
T  12250054 aagatttattgaagagaaaatttatggagtttagtcttattgaagacatgtttgtttgatttaaaaatagctccctcaaatttgttgcattttgcacaaa 12250153  T
Q  119 tctcttcaaggtagtctctttccaaactaacttatcattcccagcaagatgaagtgattgtaatttggaaaggtccgagatttgagaaggaatttcatct 218  Q
     |||||||| || || ||   ||||| ||| | |  |||| | |  ||||||||||||| ||||||||||||||  ||||||||||  |||| |||| ||    
T  12250154 cctcttcaacgtggtttccccccaaattaaatcaaaattctcggagagatgaagtgattctaatttggaaaggtgtgagatttgagttggaacttcacct 12250253  T
Q  219 tgaaagaaacaagaagacaagtcgagatgtgtaaga 254  Q
    | |||||||| |  ||||||||| ||||||||||||    
T  12250254 ttaaagaaactattagacaagtcaagatgtgtaaga 12250289  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 11120005 - 11120245
Alignment:
Q  14 agagaaagattgattgaagagcaagtttatggagtttggtcttatcaaagacatgtctgtataatccaaaaacagctcccttaaacttgttgcgttttgc 113  Q
    |||| ||||||| |||||||||||    | |||||||||||||||  ||||||| |  ||   || ||||||||||||   ||||  |||||| ||||||    
T  11120005 agaggaagattggttgaagagcaaaggaaaggagtttggtcttattgaagacatattagttctatacaaaaacagctcttgtaaatctgttgcattttgc 11120104  T
Q  114 acaagtctcttcaaggtagtctctttccaaactaacttatcattcccagcaagatgaagtgattgtaatttggaaaggtccgagatttgagaaggaattt 213  Q
    |  ||||| ||||||||  |||||||| |||||||||   |||||||||  |||| ||| ||||||||||||||||| |  ||||||||||  |||||||    
T  11120105 agcagtctgttcaaggtgatctctttcaaaactaact---cattcccagagagataaagggattgtaatttggaaagatatgagatttgagttggaattt 11120201  T
Q  214 catcttgaaagaaacaagaagacaagtcgagatgtgtaagactc 257  Q
    || | | || |  || | |||||||||  |||||||||||||||    
T  11120202 caccataaatgttactataagacaagtaaagatgtgtaagactc 11120245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 15590822 - 15590938
Alignment:
Q  14 agagaaagattgattgaagagcaagtttatggagtttggtcttatcaaagacatgtctgtataatccaaaaacagctcccttaaacttgttgcgttttgc 113  Q
    |||| ||||||||||| ||| ||| || ||||  |||||| ||||  ||||||| | ||| | || |||||  |||| | ||||| ||||||| ||||||    
T  15590822 agaggaagattgattggagatcaaattgatgggttttggttttattgaagacatatttgtgtcatacaaaagtagctgctttaaatttgttgcattttgc 15590921  T
Q  114 acaagtctcttcaaggt 130  Q
    ||||| |||||||||||    
T  15590922 acaagcctcttcaaggt 15590938  T

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