View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_138 (Length: 287)
Name: NF1139_high_138
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_138 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 34 - 287
Target Start/End: Complemental strand, 16956511 - 16956257
Alignment:
| Q |
34 |
aatatccatcttcattattaaatactagcaagataaccctgttgacaattaaccagcaaatgcatgcaacaaaacataccaatcttttcactttttgttg |
133 |
Q |
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| T |
16956511 |
aatatccatcttgattgttaaatactagcaagataaccctgttaacaattaaccagcaaatgcatgcaaaaaaacataccaatcttttcactttttgttg |
16956412 |
T |
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| Q |
134 |
tgagttacccatagcaatagcaattcgaactccggaaacctgtgtaggagtatcaccatgttaaccaca---gatttcttctttccttcccatcatgttt |
230 |
Q |
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| T |
16956411 |
tgagttactcatagcaataacactttgaactccagaaacctgtgtaggagtatcaccatgttaaccacatagtatttcttctttcctacccatcatgttt |
16956312 |
T |
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| Q |
231 |
ataaattgtaatatgcaatagaaaaattacactttcaattccattatccaggacagg |
287 |
Q |
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| T |
16956311 |
ataaattgta--atgtcatagaaaaattacactttcaattccattatccaggacagg |
16956257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 16934978 - 16935043
Alignment:
| Q |
219 |
cccatcatgtttataaattgtaatatgcaatagaaaaattacactttcaattccattatccaggac |
284 |
Q |
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| T |
16934978 |
cccatcatatttataaattgtaatatgacattgcaaagctgcactttcgattccattatccaggac |
16935043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 280
Target Start/End: Complemental strand, 26633834 - 26633734
Alignment:
| Q |
181 |
gagtatcaccatgttaaccacagatttc-ttctttccttcccatcatgtttataaattgtaatatgcaatagaaaaattacactttcaattccattatcc |
279 |
Q |
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| T |
26633834 |
gagtattacaatgttatccacagatttccttccttacgtaccatcatgtttatatattgtaatatgacattgcaaagttagactttcaattccattatcc |
26633735 |
T |
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| Q |
280 |
a |
280 |
Q |
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| T |
26633734 |
a |
26633734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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