View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_155 (Length: 255)
Name: NF1139_high_155
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_155 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 59 - 223
Target Start/End: Original strand, 14812660 - 14812825
Alignment:
| Q |
59 |
aagcaccttcctccacatacataactgctaaaaactttaattaaagacttctatgctccaaatgcatcctccaacatcattaacctaatagagccaaatt |
158 |
Q |
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| T |
14812660 |
aagcaccttcctccacatacataactactaaaaactttaattaaagatttctatgttccaaatgcatcctccaacatcatttaccaaatagagctaaatt |
14812759 |
T |
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| Q |
159 |
aaactccactaatctctaaa-ccccgaacatcctttctccttatccaaacaaataatgtcccattg |
223 |
Q |
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|||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14812760 |
aaactccactaacctctaaacccccaaacatcctttctccttatccaaacaaataatgtcccattg |
14812825 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 38570835 - 38570865
Alignment:
| Q |
218 |
ccattgctttctctccctcatcttcatctca |
248 |
Q |
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| T |
38570835 |
ccattgctttctctccctcatcttcatctca |
38570865 |
T |
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