View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_158 (Length: 253)
Name: NF1139_high_158
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_158 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 4178310 - 4178087
Alignment:
| Q |
29 |
atgaattgcatggtttttcctcttgattagagaaattacttgcatttgattttaattgtgattttctttttctacagttaataaaggaacccacattcta |
128 |
Q |
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| T |
4178310 |
atgaattgcatggtttttcctcttgattagagaaattacttgcatttgattttaattgtgattttctttttctacagttaataaaggtacccacattcta |
4178211 |
T |
|
| Q |
129 |
tcaccatattaattccaagtgggaatcatcacaagacttcactgatggtcatgctgccatatgcaggtatatatttttt-aagtttattatatgaattta |
227 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4178210 |
tcaccatattaattccatgtgggaatcatcacaagacttcactgatggtcatgctgccatatgcaggtatatattttttaaagtttattatatgaattta |
4178111 |
T |
|
| Q |
228 |
atttgtacaccgtcagcgtaaata |
251 |
Q |
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||||||||||||| |||||||||| |
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| T |
4178110 |
atttgtacaccgttagcgtaaata |
4178087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 29 - 253
Target Start/End: Original strand, 4077706 - 4077921
Alignment:
| Q |
29 |
atgaattgcatggtttttcctcttgattagagaaattacttgcatttgattttaattgtgattttctttttctacagttaataaaggaacccacattcta |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4077706 |
atgaattgcatggtttttcctcttgattag---------ttgcatttgattttaattgtgattttctttttctacagttaataaagaaacccacattcta |
4077796 |
T |
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| Q |
129 |
tcaccatattaattccaagtgggaatcatcacaagacttcactgatggtcatgctgccatatgcaggtatatattttttaagtttattatatgaatttaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
4077797 |
tcaccatattaattccaagtgggaatcatcacaagacttcactgatggtcatgctgccatatacaggtatatatcttttaagtttattatatgaatttaa |
4077896 |
T |
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| Q |
229 |
tttgtacaccgtcagcgtaaatagt |
253 |
Q |
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||||||||||||||||||||||||| |
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| T |
4077897 |
tttgtacaccgtcagcgtaaatagt |
4077921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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