View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_16 (Length: 577)
Name: NF1139_high_16
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 126 - 566
Target Start/End: Complemental strand, 41312660 - 41312242
Alignment:
| Q |
126 |
taactgaatgacatggagggaataacgaaaacaaataatttttcttaaagtctgcttcccaacaaagagtaattcaaaataatagagtttaaatctctac |
225 |
Q |
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| T |
41312660 |
taactgaatgacatggagggaatcacgaaaataaataatttt-cttgaagtttgcttcccaacaaagagtaattcaaattaatagagtttgaatctctac |
41312562 |
T |
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| Q |
226 |
gtgtagaatatttgacaatcccacgagcctataaaaaccaaactaaaaattattgtcaaagttgaacacagaagtccaacatgaactgattgttctgtgt |
325 |
Q |
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| T |
41312561 |
gtgtagaatgtttgacaatcccgcgagcctataaaaaccaaactaaaaattattgtcaaagttgaacacagaaatccaacatgaactgattgttctgtgt |
41312462 |
T |
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| Q |
326 |
ttattaaagcattgccatcaacgtttagtatcaaagtatcattatcattatgttgccaacacattttcctataagggcacaaaaggggcagggaatgtga |
425 |
Q |
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| T |
41312461 |
ttattaaagtat---cat------------------tatcattatcattatgttgccaacacattttcctctgagggcacaaaaggggcagggaatgtga |
41312383 |
T |
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| Q |
426 |
gttgtcaaatgctcgttgtgatatgtgaagctatgaaaaatttaaggcaatcgtggacgcattccttgaatgtgtacctttaaatacaagtttgttcctt |
525 |
Q |
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| T |
41312382 |
gttgtcaaatgctcgttgtggtatgtgaagctatgaaaaaattaaggcaattgtggacgcattccttgaatgtgtacctttagatacaagtttgttcctt |
41312283 |
T |
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| Q |
526 |
gtgcaccattgatccacataatcaaaggagttatgattcat |
566 |
Q |
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| T |
41312282 |
gtgcaccactgatccacataatcaaaggagttatgattcat |
41312242 |
T |
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