View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_high_160 (Length: 252)

Name: NF1139_high_160
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_high_160
NF1139_high_160
[»] chr1 (1 HSPs)
chr1 (10-117)||(2094211-2094321)
[»] chr3 (2 HSPs)
chr3 (25-98)||(53782276-53782349)
chr3 (118-252)||(54528855-54528991)
[»] chr5 (4 HSPs)
chr5 (125-252)||(17644507-17644635)
chr5 (118-199)||(7164274-7164355)
chr5 (118-227)||(1145776-1145886)
chr5 (150-199)||(40266539-40266588)
[»] chr7 (1 HSPs)
chr7 (150-199)||(149051-149100)
[»] chr6 (2 HSPs)
chr6 (138-199)||(807122-807183)
chr6 (97-148)||(806687-806739)
[»] chr4 (1 HSPs)
chr4 (216-252)||(27992303-27992339)


Alignment Details
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 2094211 - 2094321
Alignment:
Q  10 attattcttgg-ttgttgttgcttgtgtagtaatgtatattt--gaccacaccccacttggattggaccaggctgctggcctttaagagaaacaaaacca 106  Q
    ||||||||||| |||||||||||||| |||||||||||||||  || ||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  2094211 attattcttgggttgttgttgcttgtatagtaatgtatatttttgatcacaccccacttggattggaccaggctgctggcttttatgagaaacaaaacca 2094310  T
Q  107 gcgtaagttaa 117  Q
    |||| ||||||    
T  2094311 gcgtgagttaa 2094321  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 53782276 - 53782349
Alignment:
Q  25 tgttgcttgtgtagtaatgtatatttgaccacaccccacttggattggaccaggctgctggcctttaagagaaa 98  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  53782276 tgttgcttgtatagtaatgtatctttgaccacaccccacttggattggaccaggctgctgccttttaagagaaa 53782349  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 252
Target Start/End: Original strand, 54528855 - 54528991
Alignment:
Q  118 tcacgctgggttttagtgtgtttttctttt-gtgtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagcatgacat-acttatgtt 215  Q
    ||||||||||||||||| ||||||| |||| ||| ||||||||||||| | ||||| ||||||| |  |||||||||| |||  |||  | ||| | |||    
T  54528855 tcacgctgggttttagtttgtttttttttttgtgcgacttaagtcatgaaacgtgagttaactcccacaaatttaacattagtgtgaattaactcaggtt 54528954  T
Q  216 gcgtaagttaacatgcatagggatattttggacattt 252  Q
    |||| ||||||||||  ||||| ||||||||||||||    
T  54528955 gcgtgagttaacatgtgtaggggtattttggacattt 54528991  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 252
Target Start/End: Original strand, 17644507 - 17644635
Alignment:
Q  125 gggttttagtgtgtttttcttttgtgtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagcatgacat-acttatgttgcgtaagt 223  Q
    ||||||||||||||  || || || |||| |||||||| ||||||||| |||||||| | ||||||||||||||| |||  | |||| | |||||| | |    
T  17644507 gggttttagtgtgtgatttttctgcgtgatttaagtcacgcagcgtgagttaactcatgtaaatttaacactagcgtgagttaacttttattgcgtgaat 17644606  T
Q  224 taacatgcatagggatattttggacattt 252  Q
    |||||||| ||||| ||||||||||||||    
T  17644607 taacatgcgtaggggtattttggacattt 17644635  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 7164355 - 7164274
Alignment:
Q  118 tcacgctgggttttagtgtgtttttcttttgtgtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagc 199  Q
    ||||| ||||||||||||||| ||| || || ||||||||||||| || ||||||||||||||| | |||||||||| ||||    
T  7164355 tcacgttgggttttagtgtgtgttttttctgcgtgacttaagtcacgcggcgtgaattaactcatgcaaatttaacattagc 7164274  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 1145776 - 1145886
Alignment:
Q  118 tcacgctgggttttagtgtgtttttcttttgtgtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagcatgacat-acttatgttg 216  Q
    |||||||||||||| |||||| ||| || || |||||||||| || ||||||||| |||||||| | |||||| ||| |||| |||  | ||| |||| |    
T  1145776 tcacgctgggttttggtgtgtattttttctgcgtgacttaagacacgcagcgtgagttaactcatgcaaattttacattagcgtgagttaactaatgtag 1145875  T
Q  217 cgtaagttaac 227  Q
    |||||||||||    
T  1145876 cgtaagttaac 1145886  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 40266539 - 40266588
Alignment:
Q  150 gtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagc 199  Q
    ||||||||||||| | ||||||| |||||||||| |||||||||| ||||    
T  40266539 gtgacttaagtcacgtagcgtgagttaactcacgcaaatttaacattagc 40266588  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 149100 - 149051
Alignment:
Q  150 gtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagc 199  Q
    ||||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  149100 gtgacttaagtcatgcaacgtgacttaactcacgcaaatttaacactagc 149051  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 807122 - 807183
Alignment:
Q  138 tttttcttttgtgtgacttaagtcatgcagcgtgaattaactcacgaaaatttaacactagc 199  Q
    ||||| ||||| ||||||||||||| |||| |||| |||||||||| |||||||||||||||    
T  807122 ttttttttttgcgtgacttaagtcacgcagtgtgagttaactcacgcaaatttaacactagc 807183  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 806739 - 806687
Alignment:
Q  97 aacaaaaccagcgtaagttaa-tcacgctgggttttagtgtgtttttcttttg 148  Q
    |||||||||||||| |||||| ||||| ||||||| ||||||||||| |||||    
T  806739 aacaaaaccagcgtgagttaactcacgttgggtttcagtgtgttttttttttg 806687  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 27992303 - 27992339
Alignment:
Q  216 gcgtaagttaacatgcatagggatattttggacattt 252  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  27992303 gcgtgagttaacatgcataggggtattttggacattt 27992339  T

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