View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_162 (Length: 252)
Name: NF1139_high_162
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_162 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 40515634 - 40515859
Alignment:
| Q |
6 |
gttaagaatagtcttcattactcaagccaattttattaaatttgattaggctcaattcaaatacgaagatggtgtaaagatgaaaaataaaaagcatata |
105 |
Q |
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| T |
40515634 |
gttaggaatagtcttcattactcaagccaattttattaaatttgattaggctcaattcaaatacgaagatggtgtaaagatgaaaaataaaaagcatata |
40515733 |
T |
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| Q |
106 |
atgaaacacaaaactaaggtttgaaatgg-------agtagtgtaatgtttttgtcctattgtatgatgattaaaggccacgtgtagaaccaggggttct |
198 |
Q |
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| T |
40515734 |
atgaaacacaaaactaaggtttgaaatggagtagtcagtagtgtaatgtttttgtcctattgtatgatgattaaaggccacgtgtagaaccaggggttct |
40515833 |
T |
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| Q |
199 |
ctacattctgtccctttccttgtagt |
224 |
Q |
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|||||||||||||||||||||||||| |
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| T |
40515834 |
ctacattctgtccctttccttgtagt |
40515859 |
T |
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