View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_170 (Length: 251)
Name: NF1139_high_170
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_170 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 53127118 - 53126879
Alignment:
| Q |
1 |
ctattatattttggcacgcacaactcatttgtatttttcttatcgttacaggaggattgatatgattgaggaactagagagtacggcaggactttgtatt |
100 |
Q |
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| T |
53127118 |
ctattatattttggcacgcacaactcatttgtatttttcttatcgttacaggaggattgatatgattgaggaactagagagtatggcaggacttagtatt |
53127019 |
T |
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| Q |
101 |
ccgaaggacttggctagtgaggaagctaatgaatatctgaagaatgcatgcctgaagtatgacatcaaatgcgctccccctcaaaccactgctcggttgt |
200 |
Q |
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| T |
53127018 |
acgaaggacttggctagtgaggaagctaatgaatatctgaagaatgcatgcttgaagtatgacatcaaatgcgctccccctcaaaccactgctcggttgt |
53126919 |
T |
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| Q |
201 |
tggataaagtaatgtacaatctgtttctttgttggcctat |
240 |
Q |
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| T |
53126918 |
tggataaagtaatgtacaatctgtttctttgttggcctat |
53126879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 53109269 - 53109055
Alignment:
| Q |
23 |
actcatttgtatttttcttatcgttacaggaggattgatatgattgaggaactagagagtacggcaggactttgtattccgaaggacttggctagtgagg |
122 |
Q |
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| T |
53109269 |
actcatttgtatttttatt---gttacaggaggattgatatgattgaggaactagagagtatgacaggacttagtattcccaaggacttggccagtgagg |
53109173 |
T |
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| Q |
123 |
aagctaatgaatatctgaagaatgcatgcctgaagtatgacatcaaatgcgctccccctcaaaccactgctcggttgttggataaagtaatgtacaatct |
222 |
Q |
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| T |
53109172 |
aagctaatgaatatctgaagaatgtatgcttgaactatgacatcaaatgcgctccccctcaaaccactgctcggttgatggataaagtaatgtacaatct |
53109073 |
T |
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| Q |
223 |
gtttctttgttggcctat |
240 |
Q |
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| T |
53109072 |
gtttctttgttggcctat |
53109055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 46 - 240
Target Start/End: Complemental strand, 53114674 - 53114480
Alignment:
| Q |
46 |
ttacaggaggattgatatgattgaggaactagagagtacggcaggactttgtattccgaaggacttggctagtgaggaagctaatgaatatctgaagaat |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| | ||| ||||||||| |||||||||||||| |
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| T |
53114674 |
ttacaggaggattgatatgattgaggaactagagagtatggcaggacttagtattcccaaggacttggccactgacgaagctaatcaatatctgaagaat |
53114575 |
T |
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| Q |
146 |
gcatgcctgaagtatgacatcaaatgcgctccccctcaaaccactgctcggttgttggataaagtaatgtacaatctgtttctttgttggcctat |
240 |
Q |
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| T |
53114574 |
gcatgcttggagtatgacattaaatgcgctcccgctcaaacaactgctcgattgttggataaagtaattcacaatctgtttctttgttggcctat |
53114480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 53118569 - 53118402
Alignment:
| Q |
75 |
tagagagtacggcaggactttgtattccgaaggacttggctagtgaggaagctaatgaatatctgaagaatgcatgcctgaagtatgacatcaaatgcgc |
174 |
Q |
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| T |
53118569 |
tagagagtatggtaggacttaatattccgaaggacttggccagtgaggaagctaatgaatatctgaagaatgcatgcttgaagtatgacaacaaatgcgc |
53118470 |
T |
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| Q |
175 |
tccccctcaaaccactgctc-ggt-tgttggataaagtaatgtacaatctgtttctttgttggcctat |
240 |
Q |
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| T |
53118469 |
tcgccctcaaaccactgctctggtgtgttggataaagtaatgtacaatctgtttctttgttggcctat |
53118402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 213
Target Start/End: Original strand, 15839918 - 15840086
Alignment:
| Q |
45 |
gttacaggaggattgatatgattgaggaactagagagtacggcaggactttgtattccgaaggacttggctagtgaggaagctaatgaatatctgaagaa |
144 |
Q |
| |
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||||||| |||||||| |||||||| | ||||||| | |||||| || ||||||| || |||||| | |||| ||||||||| ||||||| | | | |
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| T |
15839918 |
gttacagaaggattgacatgattgaaggactagaggagatggcaggcctcagtattcctaaagacttgacgagtgctgaagctaatcaatatctaaggga |
15840017 |
T |
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| Q |
145 |
tgcatgcctgaagtatgacatcaaatgcgctccccctcaaaccactgctcggttgttggataaagtaat |
213 |
Q |
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||| ||| ||||||| || |||||||| | || ||| |||| ||||| || ||||||||||| ||||| |
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| T |
15840018 |
tgcctgcttgaagtacgaaatcaaatgtccccctcctgaaacaactgcacgtttgttggataaggtaat |
15840086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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