View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_171 (Length: 251)
Name: NF1139_high_171
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_171 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 23570643 - 23570402
Alignment:
| Q |
2 |
cacgtgatatatcaaataactatgtcatacttattaacctctttatatcaattataagaagnnnnnnnggtaacaaattactgaatattaataatacact |
101 |
Q |
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| T |
23570643 |
cacgtgatatatcaaataactatgtcatacttattaacctctttatatcaattataagaagaaaaaaaggtaacaaattacttaatattaataatacact |
23570544 |
T |
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| Q |
102 |
tgtataggtattagagaaatgaaaaagtatgtgaaatattcatcaaagtattaaaaaatacataagactggtaacattaagatgagcaaataaaacttta |
201 |
Q |
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| T |
23570543 |
tgtatagttattagagaaatgaaaaagtatgtgaaatattcatcaaagtattaaaaaatacataaaactggtaacattaagatgagcaaataaaactata |
23570444 |
T |
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| Q |
202 |
tattattcataatatagaactatttttcaacttacctatgat |
243 |
Q |
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| T |
23570443 |
tattattcataatatagaactatttttcaacttacctatgat |
23570402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 23556547 - 23556511
Alignment:
| Q |
26 |
tcatacttattaacctctttatatcaattataagaag |
62 |
Q |
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| T |
23556547 |
tcatacttattaacctctttatatcaatcataagaag |
23556511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 24179059 - 24179120
Alignment:
| Q |
183 |
atgagcaaataaaactttatatt-attcataatatagaactatttttcaacttacctatgat |
243 |
Q |
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| T |
24179059 |
atgagaaaataaaactatagatttattcataacatataattatttttcaacttacctatgat |
24179120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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