View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_175 (Length: 251)
Name: NF1139_high_175
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_175 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 106 - 251
Target Start/End: Original strand, 43440400 - 43440544
Alignment:
| Q |
106 |
catatttaacccttttgaaaataatagcattacatataataaaattatttaaattttgtccactagacaaaaacccttcgttcaaccttaaacccttcaa |
205 |
Q |
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| T |
43440400 |
catatttaagccttttgaaaatagtagcattacatataataaaattatttaaattttgaccactagacaaaa-cccttcgttcaaccttaaacccttcaa |
43440498 |
T |
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| Q |
206 |
aaaacaacgtttgtgtcgcgcataggaacaacaaatccctccaagc |
251 |
Q |
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| T |
43440499 |
aaaacaacgtttgtgtcgcgcataggaacaacaaatccctccaagc |
43440544 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 43434580 - 43434616
Alignment:
| Q |
175 |
aaaacccttcgttcaaccttaaacccttcaaaaaaca |
211 |
Q |
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| T |
43434580 |
aaaacccatcgttcaaccttaaacccttcaaaaaaca |
43434616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 20105 - 20137
Alignment:
| Q |
175 |
aaaacccttcgttcaaccttaaacccttcaaaa |
207 |
Q |
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| T |
20105 |
aaaacccatcgttcaaccttaaacccttcaaaa |
20137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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