View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_high_178 (Length: 251)
Name: NF1139_high_178
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_178 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 46062517 - 46062272
Alignment:
| Q |
1 |
acaaatgcatgtgcctaatttggtttatttgctaatacagatatgatgttcattcctatcccacattcaagtttttcccaaagaacaataaaaccggtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46062517 |
acaaatgcatgtgcctaatttggtttatttgctaatacagatatgatgttcattcctatcccacattcaagtttttcccaaagaacaataaaaccggtga |
46062418 |
T |
|
| Q |
101 |
agattatgttggtggtcgtgatatggacgattttgtatttttcattaatgcgagatgtggcactaaccgtgatgaacagggtcaacttacttctaaagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46062417 |
agattatgttggtggtcgtgatatggacgattttgtatttttcattaatgcgagatgtggcactaaccgtgatgaacagggtcaacttacttctaaagtt |
46062318 |
T |
|
| Q |
201 |
agtttaaaatatatgtttagcatcataagagactagaataatatac |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46062317 |
agtttaaaatatatgtttagcatcataagagactagaataatatac |
46062272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University