View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_182 (Length: 251)
Name: NF1139_high_182
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_182 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 7929892 - 7929671
Alignment:
| Q |
30 |
cctgggtgaacctgccaaacagaactcatcatttaaacctgcctagtaactagatatgccaaaagaaataatattatataaaggagtgctagtaacacat |
129 |
Q |
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| T |
7929892 |
cctgggtgaacctgccaaacagaactcatcatttaaacctgcctagtcactagatatgccaaaagaaataatattatataaaggagtgctagtaacacat |
7929793 |
T |
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| Q |
130 |
tctttccatcactttttctattgttgcctaaaattcacatgcatcccactattttgaaaatgtgtctcgctatataggaaatgagacccatataaacttg |
229 |
Q |
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| T |
7929792 |
tctttccatcactttttctattgttgcctaaaattcacatgcatcccactattttgaaaatgtgtcttgctatataggaaatgagacccatataaacttg |
7929693 |
T |
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| Q |
230 |
tagaatccacatgaattttagt |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
7929692 |
tagaatccacatgaattttagt |
7929671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 248
Target Start/End: Complemental strand, 7942497 - 7942279
Alignment:
| Q |
30 |
cctgggtgaacctgccaaacagaactcatcatttaaacctgcctagtaactagatatgccaaaagaaataatattatataaaggagtgctagtaacacat |
129 |
Q |
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|||||||| |||||||||||||||||||||||| |||||| |||||| ||| | |||||||||||||| | || || ||||| |||||||| ||||||| |
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| T |
7942497 |
cctgggtggacctgccaaacagaactcatcattcaaacctccctagtcactttacatgccaaaagaaattaaatcatgtaaagaagtgctagcaacacat |
7942398 |
T |
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| Q |
130 |
tctttccatcactttttctattgttgcctaaaattcacatgcatcccactattttgaaaatgtgtctcgctatataggaaatgagacccatataaacttg |
229 |
Q |
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| T |
7942397 |
tatttttatcactttttctatagtttcctaaaattcatatgcaacccaccattttcaaaatttgtctcactatataagaaatgagaccgatataaattag |
7942298 |
T |
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| Q |
230 |
tagaatccacatgaatttt |
248 |
Q |
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| T |
7942297 |
cagaatccacatgaatttt |
7942279 |
T |
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