View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_184 (Length: 249)
Name: NF1139_high_184
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_184 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 52828870 - 52829112
Alignment:
| Q |
1 |
ccaattaatcaaatggtcaaacagaatgatgtcctgctttgctagagacttttttgtcaattccagcgagacattatagttttatcattctattgaaaat |
100 |
Q |
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| T |
52828870 |
ccaattaatcaaatggtcaaacagaatgatgtcctgctttgctagagacttttttgtcaattccagcgagacattatagttttatcattctattgaaaat |
52828969 |
T |
|
| Q |
101 |
agtcactacaaccactccatctggctgtaatttacacaaatatacttattgacaaatgagtttataagtacggctaatcacctattaacctaaacagttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52828970 |
agtcactacaaccactccatctggctgtaatttacacaaatatacttattgacaaatgagtttataagtacggctaatcacctattaacctaaacagttc |
52829069 |
T |
|
| Q |
201 |
atattttccaggtttccatgtcagatccgcctctttcatctca |
243 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52829070 |
atattttccaggtttccatgtcagatccgcctctttcttctca |
52829112 |
T |
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