View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_high_212 (Length: 207)

Name: NF1139_high_212
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_high_212
NF1139_high_212
[»] chr7 (2 HSPs)
chr7 (25-106)||(34292147-34292228)
chr7 (25-94)||(34566642-34566711)
[»] chr5 (1 HSPs)
chr5 (128-167)||(8361837-8361876)


Alignment Details
Target: chr7 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 34292147 - 34292228
Alignment:
Q  25 agaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaattgcatggctcttc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34292147 agaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaattgcatggctcttc 34292228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 34566642 - 34566711
Alignment:
Q  25 agaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaatt 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34566642 agaatatcccacacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaatt 34566711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 8361837 - 8361876
Alignment:
Q  128 caccacagaaccaagttacttgcagttaggaaagaaaagg 167  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8361837 caccacagaaccaagttacttgcagttaggaaagaaaagg 8361876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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