View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_217 (Length: 204)
Name: NF1139_high_217
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_217 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 41859797 - 41859971
Alignment:
| Q |
1 |
tagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatcat |
100 |
Q |
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| T |
41859797 |
tagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatcat |
41859896 |
T |
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| Q |
101 |
gtgaacttacatatgaggagctttgtttaactttcattttgttctacattaataggtgaaggaagggagtattat |
175 |
Q |
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| T |
41859897 |
gtgaacttacatatgaggagctttgtttaactttcattttgttctacattaataggtgaaggaagggagtattat |
41859971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 41887698 - 41887872
Alignment:
| Q |
1 |
tagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatcat |
100 |
Q |
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| T |
41887698 |
tagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagtagaaacccttcaattattcatcatcat |
41887797 |
T |
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| Q |
101 |
gtgaacttacatatgaggagctttgtttaactttcattttgttctacattaataggtgaaggaagggagtattat |
175 |
Q |
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| T |
41887798 |
gtgaacttacatatgaggagctttgtttaacttttattttgttctacattaataggtgaaggaagggagtattat |
41887872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 41878668 - 41878834
Alignment:
| Q |
1 |
tagttgatcaaataaatgattatgtacttaagttgattccaggtatgtgcaattagttctccattttattagta-gaaacccttcaattattcatcatca |
99 |
Q |
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| T |
41878668 |
tagttgatcaaataaatgattatgtacttaagttgattcctggtacgtgtaattagttaaccatc--agtagaaagaaacccttcaattattcattatca |
41878765 |
T |
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| Q |
100 |
tgtgaacttacatatgaggagctttgtttaactttcattttgttctac-attaataggtgaaggaaggg |
167 |
Q |
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|||||||||| || ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
41878766 |
tgtgaacttaaatttgaggagctttgtttaactttagttttgttctacgattaataggtgaagaaaggg |
41878834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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