View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_high_39 (Length: 490)

Name: NF1139_high_39
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_high_39
NF1139_high_39
[»] chr4 (3 HSPs)
chr4 (97-481)||(25744219-25744608)
chr4 (347-481)||(25740519-25740653)
chr4 (400-481)||(17383423-17383504)
[»] chr2 (1 HSPs)
chr2 (400-481)||(8535008-8535089)
[»] scaffold0515 (1 HSPs)
scaffold0515 (200-240)||(10111-10151)
[»] scaffold0152 (2 HSPs)
scaffold0152 (200-240)||(27731-27771)
scaffold0152 (200-240)||(36507-36547)
[»] scaffold0055 (8 HSPs)
scaffold0055 (200-240)||(17958-17998)
scaffold0055 (200-240)||(20688-20728)
scaffold0055 (200-240)||(23927-23967)
scaffold0055 (200-240)||(37160-37200)
scaffold0055 (200-240)||(45009-45049)
scaffold0055 (200-240)||(57734-57774)
scaffold0055 (200-237)||(29273-29310)
scaffold0055 (200-240)||(76425-76464)
[»] scaffold0052 (8 HSPs)
scaffold0052 (200-240)||(8916-8956)
scaffold0052 (200-240)||(12118-12158)
scaffold0052 (200-240)||(16563-16603)
scaffold0052 (200-240)||(20931-20971)
scaffold0052 (200-240)||(39857-39897)
scaffold0052 (200-240)||(55338-55378)
scaffold0052 (200-237)||(66755-66792)
scaffold0052 (200-240)||(43328-43367)
[»] scaffold0986 (1 HSPs)
scaffold0986 (200-238)||(202-240)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 97 - 481
Target Start/End: Complemental strand, 25744608 - 25744219
Alignment:
Q  97 accaatctgcagaaacaatcatgaagggttgttaagtatataaaatatttcctct---acannnnnnnnnn--atgaagaatgaattgaatcaacagtgg 191  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||    |||            |||||||||||||||||||||||||||    
T  25744608 accaatctgcagaaacaatcatgaagggttgttaagtgtatagaatatttcctcgcacacattttttttttttatgaagaatgaattgaatcaacagtgg 25744509  T
Q  192 atgaatctagtggatcgtggcagcaaggtcactctgccacttacaatactatgtcactcgtctgatgatatttccttgtacttggttttagtacataacc 291  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25744508 atgaatctagtggatcgtggcagcaaggtcactctaccacttacaatactatgtcactcgtctgataatatttccttgtacttggttttagtacataacc 25744409  T
Q  292 aacgggtgttatatggcgcaagggcaatgtaagtgcaaattactctgagaaggactatacagttaagttcaagtaaaagtgtaacatacccgggaaatgc 391  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25744408 aacgggtgttatatggcgcaagggcaatgtaagtgcaaattattctgagaaggactatacagttaagttcaagtaaaagtgtaacatacctgggaaatgc 25744309  T
Q  392 tttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataat 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25744308 tttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataat 25744219  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 347 - 481
Target Start/End: Complemental strand, 25740653 - 25740519
Alignment:
Q  347 tatacagttaagttcaagtaaaagtgtaacatacccgggaaatgctttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatct 446  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25740653 tatactgttaagtttaagtaaaagtgtaacataccagggaaatgctttggaataaaaagccttaaaacaacagcaactaaagcaatccattttccaatct 25740554  T
Q  447 ctcctctgcgtagtcatgcaaataagtagaataat 481  Q
    |||||||||||||||||||||||||||||||||||    
T  25740553 ctcctctgcgtagtcatgcaaataagtagaataat 25740519  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 400 - 481
Target Start/End: Complemental strand, 17383504 - 17383423
Alignment:
Q  400 aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataat 481  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||  ||||||||| ||||||    
T  17383504 aaaaagccttaaaacaacagcaactaaagcaattcattttccaatctctcctctgcatagtcataaaaataagtataataat 17383423  T

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Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 400 - 481
Target Start/End: Complemental strand, 8535089 - 8535008
Alignment:
Q  400 aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcgtagtcatgcaaataagtagaataat 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  8535089 aaaaagccttaaaacaacagcaactaaagcaatccattttccaatctctcctctgcatagtcatgaaaataagtagaataat 8535008  T

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Target: scaffold0515 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 10151 - 10111
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  10151 agtggatcgtggcagcaaggccactctgccacttacaatac 10111  T

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Target: scaffold0152 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 27771 - 27731
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  27771 agtggatcgtggcagcaaggccactctgccacttacaatac 27731  T

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Target: scaffold0152; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 36547 - 36507
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  36547 agtggatcgtggcagcaaggccactctgccacttacaatac 36507  T

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Target: scaffold0055 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 17998 - 17958
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  17998 agtggatcgtggcagcaaggccactctgccacttacaatac 17958  T

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Target: scaffold0055; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 20688 - 20728
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  20688 agtggatcgtggcagcaaggccactctgccacttacaatac 20728  T

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Target: scaffold0055; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 23927 - 23967
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  23927 agtggatcgtggcagcaaggccactctgccacttacaatac 23967  T

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Target: scaffold0055; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 37160 - 37200
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  37160 agtggatcgtggcagcaaggccactctgccacttacaatac 37200  T

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Target: scaffold0055; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 45009 - 45049
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  45009 agtggatcgtggcagcaaggccactctgccacttacaatac 45049  T

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Target: scaffold0055; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 57734 - 57774
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  57734 agtggatcgtggcagcaaggccactctgccacttacaatac 57774  T

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Target: scaffold0055; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 29310 - 29273
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaa 237  Q
    |||||||||||||||||||| |||||||||||||||||    
T  29310 agtggatcgtggcagcaaggccactctgccacttacaa 29273  T

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Target: scaffold0055; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 76425 - 76464
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  76425 agtggatcgtggcagcaaggccactctg-cacttacaatac 76464  T

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Target: scaffold0052 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 8916 - 8956
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  8916 agtggatcgtggcagcaaggccactctgccacttacaatac 8956  T

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Target: scaffold0052; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 12118 - 12158
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  12118 agtggatcgtggcagcaaggccactctgccacttacaatac 12158  T

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Target: scaffold0052; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 16603 - 16563
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  16603 agtggatcgtggcagcaaggccactctgccacttacaatac 16563  T

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Target: scaffold0052; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 20931 - 20971
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  20931 agtggatcgtggcagcaaggccactctgccacttacaatac 20971  T

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Target: scaffold0052; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 39897 - 39857
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  39897 agtggatcgtggcagcaaggccactctgccacttacaatac 39857  T

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Target: scaffold0052; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 55338 - 55378
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  55338 agtggatcgtggcagcaaggccactctgccacttacaatac 55378  T

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Target: scaffold0052; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 66755 - 66792
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaa 237  Q
    |||||||||||||||||||| |||||||||||||||||    
T  66755 agtggatcgtggcagcaaggccactctgccacttacaa 66792  T

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Target: scaffold0052; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 43328 - 43367
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaatac 240  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  43328 agtggatcgtggcagcaaggccactctg-cacttacaatac 43367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0986 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0986
Description:

Target: scaffold0986; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 240 - 202
Alignment:
Q  200 agtggatcgtggcagcaaggtcactctgccacttacaat 238  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  240 agtggatcgtggcagcaaggccactctgccacttacaat 202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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