View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_4 (Length: 807)
Name: NF1139_high_4
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 734; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 28 - 798
Target Start/End: Original strand, 47456140 - 47456910
Alignment:
| Q |
28 |
cagaagaagccaatacaagtatagatggacataactctagtggttatacctcagaggaacaaaacatgtgtgaggaaagcagtggaggagcttctgcagc |
127 |
Q |
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| T |
47456140 |
cagaagaagccaatacaagtatagatggacataactctagtggttatacctcagaggaacaaaacatgtgtgaggaaaacagtggaggagcttctgcagc |
47456239 |
T |
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| Q |
128 |
atctaaatcaactgtgtctctcaactccaatggaaagaaaagagctagtagaggatcagcaacagatcctcaaagcctttatgcaagggtaattatcaat |
227 |
Q |
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| T |
47456240 |
atctaaatcaactgtgtctctcaactccaatggaaaaaaaagagctagtagaggatcagcaacagatcctcaaagcctttatgcaagggtaattatcaat |
47456339 |
T |
|
| Q |
228 |
ttctttataagtacaaatgccttttgtttaactattcctctttttaatctccattctgtgaaccatagcaagtggccttcttttcttgtttggaaagatg |
327 |
Q |
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| T |
47456340 |
ttctttataagtacaaatgccttttgtttaactattcctctttttaatctccattctgtgaaccatagcatgtggccttcttttcttgtttggaaagatg |
47456439 |
T |
|
| Q |
328 |
gtctcactcacactggccccttgatggcgtagctgcattcgcgaagcgaatgaagtagatagcaatatatgtggtgcttattgnnnnnnngaatcttaca |
427 |
Q |
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| T |
47456440 |
gtctcactcacactggccccttgatggcgtagctgcattcgcgaagcgaatgaagtagatagcaatatatgtggtgcttattgtctctttgaatcttaca |
47456539 |
T |
|
| Q |
428 |
gaaaagaagggagaagataaacgagagactgagaactctgcagaatcttgtaccaaatggaacaaaggtaacttatttttgcatgaatgtttttcagttt |
527 |
Q |
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| T |
47456540 |
gaaaagaagggagaagataaacgagagactgagaactctgcagaatcttgtaccaaatggaacaaaggtaacttatttttgcatgaatgtttttcagttt |
47456639 |
T |
|
| Q |
528 |
aaaggggcttgtaactatttgagagatgtataatttcatatatgggatggtcatacaggttgatataagcacaatgcttgaagatgcaatccaatatgtg |
627 |
Q |
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| T |
47456640 |
aaaggggcttgtaactatttgagagatgtataatttcacatatgggatggtcatacaggttgatataagcacaatgcttgaagatgcaatccaatatgtg |
47456739 |
T |
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| Q |
628 |
aaatttctgcagctccaaatcaaggtaatatatgagtcgcgaaatatagacgattaataattagtttctgtttagaaatatcaaggtgtgtgtatatgtt |
727 |
Q |
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| T |
47456740 |
aaatttctgcagctccaaatcaaggtaatatatgagtcgcgaaatatagacgattaataattagtttctgtttagaaatatcaaggtgtgtgtatatgtt |
47456839 |
T |
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| Q |
728 |
caatcagaataacatctttttaatatgaatgtttatttcttatatagcttctaagctctgatgatctgtgg |
798 |
Q |
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| T |
47456840 |
caatcagaataacatctttttaatatgaatgtttatttcttatatagcttctaagctctgatgatctgtgg |
47456910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 5272664 - 5272587
Alignment:
| Q |
145 |
ctctcaactccaatggaaagaaaagagctagtagaggatcagcaacagatcctcaaagcctttatgcaagggtaatta |
222 |
Q |
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|||||||||| ||||| |||| |||||||||||||||||| ||||||||||| ||||| || |||||||||||||||| |
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| T |
5272664 |
ctctcaactcaaatgggaagacaagagctagtagaggatctgcaacagatccccaaagtctatatgcaagggtaatta |
5272587 |
T |
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