View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1139_high_48 (Length: 448)

Name: NF1139_high_48
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1139_high_48
NF1139_high_48
[»] chr2 (5 HSPs)
chr2 (130-438)||(42898101-42898409)
chr2 (118-431)||(38895860-38896173)
chr2 (175-397)||(40040630-40040855)
chr2 (1-46)||(42898504-42898549)
chr2 (229-431)||(5435530-5435732)
[»] chr8 (2 HSPs)
chr8 (130-438)||(5788738-5789046)
chr8 (172-438)||(33186538-33186804)
[»] chr4 (2 HSPs)
chr4 (118-437)||(30518151-30518470)
chr4 (175-344)||(22085566-22085735)
[»] chr1 (8 HSPs)
chr1 (157-438)||(4160177-4160461)
chr1 (118-437)||(12804514-12804833)
chr1 (121-431)||(36989150-36989460)
chr1 (160-410)||(12774768-12775018)
chr1 (133-437)||(42286921-42287225)
chr1 (133-314)||(28496124-28496305)
chr1 (124-242)||(50788828-50788946)
chr1 (160-251)||(31644103-31644194)
[»] chr7 (3 HSPs)
chr7 (130-242)||(44150815-44150927)
chr7 (363-438)||(40749193-40749268)
chr7 (160-251)||(40749380-40749471)
[»] chr3 (2 HSPs)
chr3 (322-380)||(12105972-12106030)
chr3 (322-380)||(46987917-46987975)


Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 130 - 438
Target Start/End: Complemental strand, 42898409 - 42898101
Alignment:
Q  130 gttccacagtcacatctgtattagcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttcc 229  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898409 gttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttcc 42898310  T
Q  230 acttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacacaagttggttctggaca 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898309 acttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacacaagttggttctggaca 42898210  T
Q  330 cacataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattctgatctctttga 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898209 cacataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattctgatctctttga 42898110  T
Q  430 aatcctttg 438  Q
    |||||||||    
T  42898109 aatcctttg 42898101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 118 - 431
Target Start/End: Original strand, 38895860 - 38896173
Alignment:
Q  118 cttgaaaagaaagttccacagtcacatctgtattagcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcact 217  Q
    |||||||||| ||| ||||| |||||| ||||||  || || ||||| || || ||||| |||||||| || |||||||| |||||    || |||||||    
T  38895860 cttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcact 38895959  T
Q  218 tgtcacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacacaagt 317  Q
    | ||||| |||||||||||||||||||| || || || ||||||||||| || |||||||  || ||||| || ||||| || | ||  || ||||| ||    
T  38895960 tctcacacttccacttcttctcaccgtgtttcctacaaaagtgcttctttatcccagttaaatctcccaaagcccttgaaggatgattatgaacacatgt 38896059  T
Q  318 tggttctggacacacataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattc 417  Q
        |||||||||||||| ||| |||||||||| || || ||||||||||| |||| |||||| || |  || ||||| | |  |||||||||||||||     
T  38896060 cttctctggacacacatacactctcttccttatttctttacttgttctttgtttcagcttccaaggtaggttatgtccacgtcgatgaagttgaagattt 38896159  T
Q  418 tgatctctttgaaa 431  Q
    ||||| ||||||||    
T  38896160 tgatccctttgaaa 38896173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 397
Target Start/End: Complemental strand, 40040855 - 40040630
Alignment:
Q  175 tgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgataccag 274  Q
    ||||| ||||| || |||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||||||||| |  |||||||| || || || |    
T  40040855 tgagccttccaatcagattgaactgcatatttcttagaacacttatcacacttccacttcttctcaccgtgctttctactaaagtgcttttttatccctg 40040756  T
Q  275 ttaggtcccccaaggctcttgatgggtcatggtgcacacaagttggttctggacacacataaactttcttccttatctcat--tgcttg-ttctttgctt 371  Q
    | ||||| || |  |||||    |||||||||||||| ||  |   ||||||||| ||||| ||||||||||||||| | |   ||||| ||||||||||    
T  40040755 tcaggtctcctagagctctactagggtcatggtgcacgcagctcttttctggacaaacatacactttcttccttatcacctccagcttgtttctttgctt 40040656  T
Q  372 caacttccatggcaaattgtgtcctc 397  Q
     | ||||||||| | |||||||||||    
T  40040655 aagcttccatggaagattgtgtcctc 40040630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 42898549 - 42898504
Alignment:
Q  1 tttatctagctcggtacctgctcctatatcaatatatatcaatgta 46  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||    
T  42898549 tttatctagctaggtacctgctcctagatcaatatatatcaatgta 42898504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 431
Target Start/End: Original strand, 5435530 - 5435732
Alignment:
Q  229 cacttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacacaagttggttctggac 328  Q
    |||||||||||||||||||| || || ||||||||||| || || ||||  || ||||| || ||||| || | ||  || ||||   ||   |||||||    
T  5435530 cacttcttctcaccgtgcttcctacaaaagtgcttctttatccctgttaaatctcccaaagcccttgaaggatgattatgaacacggattttctctggac 5435629  T
Q  329 acacataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattctgatctctttg 428  Q
    ||||||| ||| |||||||||| |  || ||||||||||| |||| |||||| || |  || ||||| | |  ||||||||||||||| ||||| |||||    
T  5435630 acacatacactctcttccttatttttttacttgttctttgtttcagcttccaaggtaggttatgtccacgtcgatgaagttgaagattttgatccctttg 5435729  T
Q  429 aaa 431  Q
    |||    
T  5435730 aaa 5435732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 130 - 438
Target Start/End: Original strand, 5788738 - 5789046
Alignment:
Q  130 gttccacagtcacatctgtattagcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttcc 229  Q
    ||||||||||||||||| ||||  || |||||||| |||||||| ||||||||||| || |||||||| ||||| ||||| || ||||| ||||||||||    
T  5788738 gttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaacacttttcacatttcc 5788837  T
Q  230 acttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacacaagttggttctggaca 329  Q
    ||||||||||||| ||||||||| | ||||| |||||||| ||||| |  ||||| || ||||||||||| ||||| |||||||||||||||||||||||    
T  5788838 acttcttctcaccatgctttctggaaaagtgtttcttgattccagtcaaatcccctaatgctcttgatggatcatgatgcacacaagttggttctggaca 5788937  T
Q  330 cacataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattctgatctctttga 429  Q
     ||||| |||||||| || ||||| || ||||||||||| |||||||||||||| ||||| || |||||| | |||||||||||||| ||||||||||||    
T  5788938 tacatatactttctttctaatctctttacttgttctttgtttcaacttccatggtaaattatgacctcttctgtgaagttgaagattttgatctctttga 5789037  T
Q  430 aatcctttg 438  Q
    || ||||||    
T  5789038 aaccctttg 5789046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 172 - 438
Target Start/End: Complemental strand, 33186804 - 33186538
Alignment:
Q  172 gagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgatac 271  Q
    |||||||||||||| || |||||||| ||||| |||||||| || || |||||||||||||| |||||||| || ||||| || |||||||| || || |    
T  33186804 gagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccactttttctcaccatgttttctacaaaagtgcttttttatcc 33186705  T
Q  272 cagttaggtcccccaaggctcttgatgggtcatggtgcacacaagttggttctggacacacataaactttcttccttatctcattgcttgttctttgctt 371  Q
    ||||||  || || || ||||| || || ||||| || |||||||| ||||| ||||| ||||||||  | ||||| || || || |||| ||||||  |    
T  33186704 cagttaaatcacctaaagctctagaaggatcatgatgaacacaagtaggttcaggacaaacataaacccttttcctaatttctttacttgatctttgtct 33186605  T
Q  372 caacttccatggcaaattgtgtcctcttttatgaagttgaagattctgatctctttgaaatcctttg 438  Q
    ||  |||||||| | ||| ||||||||| |||| |||||||||||||||||||||||||| ||||||    
T  33186604 cagtttccatggtagattatgtcctcttctatgtagttgaagattctgatctctttgaaaccctttg 33186538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 118 - 437
Target Start/End: Original strand, 30518151 - 30518470
Alignment:
Q  118 cttgaaaagaaagttccacagtcacatctgtattagcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcact 217  Q
    |||||||||| |||||||||||||||| ||||||  || || ||||| ||||| |||||||||||||| ||||| ||||| |||||    || |||||||    
T  30518151 cttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcact 30518250  T
Q  218 tgtcacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacacaagt 317  Q
    | ||||| ||||||||||| ||||| |||||||| || |||||||| || || ||||||| ||| || |  || ||||| || |||||||| ||||||||    
T  30518251 tctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggacacaagt 30518350  T
Q  318 tggttctggacacacataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattc 417  Q
    |   |||||||||||||||||| ||||| |||| || ||| ||||||| ||||| | ||||||||| | ||| ||||| | | |||| |||||||||||     
T  30518351 tttctctggacacacataaactctcttctttatttctttgtttgttctctgcttaagcttccatggaagattatgtccacgtctatgcagttgaagattt 30518450  T
Q  418 tgatctctttgaaatccttt 437  Q
    |||||||||||||| |||||    
T  30518451 tgatctctttgaaaaccttt 30518470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 344
Target Start/End: Original strand, 22085566 - 22085735
Alignment:
Q  175 tgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgataccag 274  Q
    ||||||||||| || |||||||||||||| ||||| || ||||| ||||| ||||||||||||||||| || ||||| |   | || ||||| || || |    
T  22085566 tgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccacttcttctcaccatgttttctactataatgtttctttattcctg 22085665  T
Q  275 ttaggtcccccaaggctcttgatgggtcatggtgcacacaagttggttctggacacacataaactttctt 344  Q
    | |  || ||||| ||||| || || |||||||||||||||||    || |||||||||||||| |||||    
T  22085666 tcaaatctcccaaagctctagaaggttcatggtgcacacaagtcttctcaggacacacataaaccttctt 22085735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 157 - 438
Target Start/End: Complemental strand, 4160461 - 4160177
Alignment:
Q  157 gtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccacttcttctcaccgtgctttctgcaga 256  Q
    ||||||||  ||||||| ||||||||||| || || |||||||||||    ||||| || || ||||| ||||||||||||||||||||||| ||| | |    
T  4160461 gtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacatttctcacacttccacttcttctcaccgtgcttcctgaaaa 4160362  T
Q  257 agtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacacaagttggttctggacacacataaactttcttcctt---atctc 353  Q
    ||||||||||||| ||||||||||| || |  || ||||| ||||||||||| ||||| ||||| |||||||| ||||| |||||||| |||   || ||    
T  4160361 agtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacacatgttggctctggacaaacatatactttctttcttatgatttc 4160262  T
Q  354 attgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattctgatctctttgaaatcctttg 438  Q
    ||||    |||||| ||| | ||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| ||||||    
T  4160261 attgacgtttcttttctttagcttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttgaaaacctttg 4160177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 118 - 437
Target Start/End: Original strand, 12804514 - 12804833
Alignment:
Q  118 cttgaaaagaaagttccacagtcacatctgtattagcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcact 217  Q
    ||||| |||| ||| |||||||||||||| || |  || || ||||| || || || ||||||||||| || |||||||| ||||| |||||||| ||||    
T  12804514 cttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacact 12804613  T
Q  218 tgtcacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacacaagt 317  Q
    | |||||||||||||| |||||||| ||||||||  | ||||||||||| || ||||| ||||| || |  || ||||| ||||||||||| ||||| ||    
T  12804614 tttcacatttccactttttctcaccatgctttctagaaaagtgcttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacacatgt 12804713  T
Q  318 tggttctggacacacataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattc 417  Q
    |||||||||||||| |||||| ||  || ||  ||| ||| |  |  ||||||| | |||||| |||||||||||||||||| |||| ||||| | |||     
T  12804714 tggttctggacacaaataaacctttctctttggctctttgttactcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttgtaaattt 12804813  T
Q  418 tgatctctttgaaatccttt 437  Q
    || || |||||||| |||||    
T  12804814 tgctccctttgaaacccttt 12804833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 121 - 431
Target Start/End: Complemental strand, 36989460 - 36989150
Alignment:
Q  121 gaaaagaaagttccacagtcacatctgtattagcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgt 220  Q
    |||||||  ||||||||||||||| ||||||  ||||| |||||  ||||||| ||||||||||| || |||||||| ||||| |||||||| ||||| |    
T  36989460 gaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaacacttat 36989361  T
Q  221 cacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacacaagttgg 320  Q
    ||||||||||||| |||||||| |||||||| || |||||||| || || ||||| || || || |  |||||||  |||| |||||| ||||| |  ||    
T  36989360 cacatttccactttttctcaccatgctttctacaaaagtgctttttaattccagtaagatcaccaagtgctcttgcagggttatggtgtacacatgaagg 36989261  T
Q  321 ttctggacacacataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattctga 420  Q
    ||| ||||| ||||||||  |||| || || ||    || |||||||| || | |||||| ||||| ||||||||||||   || ||||||||||| ||     
T  36989260 ttcaggacaaacataaaccctctttctaatttctgcactagttctttgttttagcttccaaggcaagttgtgtcctcttcggtgcagttgaagattttgg 36989161  T
Q  421 tctctttgaaa 431  Q
    |||||||||||    
T  36989160 tctctttgaaa 36989150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 160 - 410
Target Start/End: Complemental strand, 12775018 - 12774768
Alignment:
Q  160 ccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccacttcttctcaccgtgctttctgcagaagt 259  Q
    ||||| ||||| || ||||||||||| || |||||||| |||||||||||||| ||||| ||||| ||||| || |||||||| ||||||||  |  |||    
T  12775018 ccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaacacttttcacacttccattttttctcaccatgctttctaaaatagt 12774919  T
Q  260 gcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacacaagttggttctggacacacataaactttcttccttatctcattgct 359  Q
    | ||||| || ||||| ||||| || |  || ||||| ||||||||||| ||||| |||||||||||||||| |||||| ||  || ||  ||| ||| |    
T  12774918 gtttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacacatgttggttctggacacaaataaacctttctctttggctctttgtt 12774819  T
Q  360 tgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttg 410  Q
      |  ||||||| | |||||| |||||||||||||||||| |||| |||||    
T  12774818 actcttttgctttagcttccaaggcaaattgtgtcctcttctatgtagttg 12774768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 133 - 437
Target Start/End: Complemental strand, 42287225 - 42286921
Alignment:
Q  133 ccacagtcacatctgtattagcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccact 232  Q
    ||||| |||||||| ||||  || || ||||| || || || || ||||||||||| |||||||| ||||| ||||| ||||| || |||||||||||||    
T  42287225 ccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagcatttttcacatttccact 42287126  T
Q  233 tcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacacaagttggttctggacacac 332  Q
    |||||||||||||||| |   |||| ||||| || || |||||||| || || || |||||||| ||||| || || || || || || || |||||||     
T  42287125 tcttctcaccgtgcttacgagagaaatgctttttaattccagttagatctcctaaagctcttgaagggtcgtgatggacgcatgtgggctcaggacacaa 42287026  T
Q  333 ataaactttcttccttatctcattgcttgttctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattctgatctctttgaaat 432  Q
    |||||| ||  |||||  ||| ||| | |   ||||||| | |||||| || | ||||||||||||| |||||||||||||||| || || ||||||||     
T  42287025 ataaacctttctccttggctctttgttggacttttgctttagcttccaaggaagattgtgtcctcttctatgaagttgaagattttgctccctttgaaac 42286926  T
Q  433 ccttt 437  Q
    |||||    
T  42286925 ccttt 42286921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 314
Target Start/End: Original strand, 28496124 - 28496305
Alignment:
Q  133 ccacagtcacatctgtattagcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccact 232  Q
    |||||||||||| ||||||  ||||| ||||| ||||| |  ||||||||||| || ||||| |||||||| || || || || || |||||||||||||    
T  28496124 ccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccact 28496223  T
Q  233 tcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacaca 314  Q
    ||||||||||||||||||| |  |||||||| || ||||| || ||||| || |  |||||||| ||||||||||| |||||    
T  28496224 tcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacaca 28496305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 242
Target Start/End: Original strand, 50788828 - 50788946
Alignment:
Q  124 aagaaagttccacagtcacatctgtattagcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcac 223  Q
    |||| ||| ||||||||||| || ||||  || |||||||| || || || || || ||||| || |||||||| |||||||||||||||||||| ||||    
T  50788828 aagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagagcacttatcac 50788927  T
Q  224 atttccacttcttctcacc 242  Q
    | ||||| |||||||||||    
T  50788928 acttccatttcttctcacc 50788946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 31644103 - 31644194
Alignment:
Q  160 ccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccacttcttctcaccgtgctttct 251  Q
    ||||||||||| |||||||||||||| || || ||||| |||||  |||| |||||||| ||||||||||| || |||||||| || |||||    
T  31644103 ccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagcacttatcacatttccattttttctcaccatgttttct 31644194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 44150815 - 44150927
Alignment:
Q  130 gttccacagtcacatctgtattagcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttcc 229  Q
    |||||||| |||||| ||||||  || || ||||| |||||   |||||| ||||| ||||||||||| |||||  | ||||||||||||||||||||||    
T  44150815 gttccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttcc 44150914  T
Q  230 acttcttctcacc 242  Q
    | |||||||||||    
T  44150915 atttcttctcacc 44150927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 438
Target Start/End: Complemental strand, 40749268 - 40749193
Alignment:
Q  363 tctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattctgatctctttgaaatcctttg 438  Q
    ||||||||| | ||||||||| |  ||||| |||||| ||||||| |||||||||||||||||||| |||||||||    
T  40749268 tctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttggaatcctttg 40749193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 40749471 - 40749380
Alignment:
Q  160 ccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccacttcttctcaccgtgctttct 251  Q
    ||||| ||||| | |||||||||||| || ||||| |||||||| ||||| || ||||| ||||| ||||| |||||||| || || |||||    
T  40749471 ccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaacacttatcacacttccatttcttctcgccatgttttct 40749380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 12106030 - 12105972
Alignment:
Q  322 tctggacacacataaactttcttccttatctcattgcttgttctttgcttcaacttcca 380  Q
    |||||||||||||| ||| |||||||||| || || ||||||||||| |||| ||||||    
T  12106030 tctggacacacatacactctcttccttatttctttacttgttctttgtttcagcttcca 12105972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 46987917 - 46987975
Alignment:
Q  322 tctggacacacataaactttcttccttatctcattgcttgttctttgcttcaacttcca 380  Q
    |||||||||||||| ||| |||||||||| || || ||||||||||| |||| ||||||    
T  46987917 tctggacacacatacactctcttccttatttctttacttgttctttgtttcagcttcca 46987975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University