View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1139_high_56 (Length: 431)
Name: NF1139_high_56
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_56 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 21 - 346
Target Start/End: Complemental strand, 52277885 - 52277561
Alignment:
| Q |
21 |
tggggcccaccctctccacaccacacgtcagccaccaccatagtgcacgttaccaacttcattcacaaaccgccgccacacctgcagccgccgaaaactc |
120 |
Q |
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| T |
52277885 |
tggggcccaccctctccacaccacacgtcagtcaccaccacagtgcacgtcaccaacttcattcacaaaccgccgccacacctgcagccgtcgaaaactc |
52277786 |
T |
|
| Q |
121 |
caaccgcaccacccaccaacaccaccgaatgacgtccataaccctgcacatcccactcttgtcgccaccaccaaggcaccgtcacctaacaacttcctcc |
220 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52277785 |
caac-gcaccacccaccaacaccaccgaatgacctccataaccctgcacatcccactcttgtcgccaccaccaaggcaccgtcacctaacaacttcctcc |
52277687 |
T |
|
| Q |
221 |
taacatcacccacaaccaacgccattgcaaatctgccactaaccctccaccacgtaaaccaccaccactttccaaaaaacctccaatgggtcccgtgaca |
320 |
Q |
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||||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52277686 |
taacaccacccaccaccaccgccattgcaaatctgccattaaccctccaccacgtaaaccaccaccacttcccaaaaaacctccaatgggtcccgtgaca |
52277587 |
T |
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| Q |
321 |
gatccaccgccacaccaagcctcaca |
346 |
Q |
| |
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||||||| |||||| ||||||||||| |
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| T |
52277586 |
gatccactgccacatcaagcctcaca |
52277561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 3477613 - 3477558
Alignment:
| Q |
88 |
aaccgccgccacacctgcagccgccgaaaactccaaccgcaccacccaccaacacca |
144 |
Q |
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||||| |||||| ||||||||||| | || ||||||||||||||||||||||||||| |
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| T |
3477613 |
aaccgtcgccactcctgcagccgctggaa-ctccaaccgcaccacccaccaacacca |
3477558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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