View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1139_high_65 (Length: 409)
Name: NF1139_high_65
Description: NF1139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1139_high_65 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 103 - 377
Target Start/End: Original strand, 8524833 - 8525107
Alignment:
| Q |
103 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8524833 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaac |
8524932 |
T |
|
| Q |
203 |
ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattga |
302 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8524933 |
ccaccaaactttgaatgaaaataagagccagagaaatcattgttagcaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattga |
8525032 |
T |
|
| Q |
303 |
atataccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccat |
377 |
Q |
| |
|
||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8525033 |
gtatgccttgaagaccttcacagccaaggttgaggccaatcacgtgaccactgatggtgtcacacgtgacaccat |
8525107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 14554452 - 14554501
Alignment:
| Q |
328 |
aaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccat |
377 |
Q |
| |
|
||||| |||||||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
14554452 |
aaggtctagttcaatcacgtgacctgatatggtgtcgcacgtgacaccat |
14554501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 103 - 380
Target Start/End: Original strand, 42125378 - 42125655
Alignment:
| Q |
103 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
42125378 |
gagatgaagtgattgtaatttggaaaggtgtgagatttgaattggaatttcacctttaaagaaactacgagacaagtcaagatgtgcaagactcataaac |
42125477 |
T |
|
| Q |
203 |
ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattga |
302 |
Q |
| |
|
||||||||||| |||||||||| ||||| | |||||| ||||||||||||||||||| |||||| || | |||||| |||||||||||||||||||| | |
|
|
| T |
42125478 |
ccaccaaacttagaatgaaaatgagagtaagagaaatcattgttagaaaggttgagtgtttgaagatgaacaagattgaaaagggtactgttaggatgta |
42125577 |
T |
|
| Q |
303 |
atataccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccattcc |
380 |
Q |
| |
|
| |||||||||| |||||||||||||| || || |||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
42125578 |
gtttaccttgaaggccttcacagccaagattgaggccaatcacgtgacgagtgatggtatcacacgtgacaccattcc |
42125655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 103 - 380
Target Start/End: Original strand, 42130603 - 42130880
Alignment:
| Q |
103 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
202 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||| ||| |
|
|
| T |
42130603 |
gagatgaagtgattgtaatttggataggtgagagatttgagttggaatttcaccttctaagttactatcagacaagtcaagatgtgtaagactctgaaat |
42130702 |
T |
|
| Q |
203 |
ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattga |
302 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||||||| ||||| ||||||||||||| |||| | || | ||||||| ||||||||||| |||||||||| |
|
|
| T |
42130703 |
ccacaaaacttataatgaaaatgagagtcaaagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatgaaaaagggtactattaggattga |
42130802 |
T |
|
| Q |
303 |
atataccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccattcc |
380 |
Q |
| |
|
|| ||||| ||| ||||||||||||||||| || |||||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
42130803 |
atgtacctgtaaggccttcacagccaaggttgaggtcaatcacgtgaccagagactgtgtcacacgtgacgccattcc |
42130880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 103 - 375
Target Start/End: Complemental strand, 41712011 - 41711739
Alignment:
| Q |
103 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
202 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
41712011 |
gagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaaaac |
41711912 |
T |
|
| Q |
203 |
ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattga |
302 |
Q |
| |
|
| ||||||||| |||||||||| |||| | |||||| ||||| ||||||||||||| |||| | || | ||||||||||||| ||| | ||||||| || |
|
|
| T |
41711911 |
cgaccaaacttagaatgaaaatgggagtaagagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatggaaaagagtattattaggatgga |
41711812 |
T |
|
| Q |
303 |
atataccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacacc |
375 |
Q |
| |
|
||||||||||||| || |||||||||||||| || ||| |||| ||||| || ||||||||| |||||||| |
|
|
| T |
41711811 |
atataccttgaaggccatcacagccaaggttgaggccaaccacgcgaccatagacggtgtcacatgtgacacc |
41711739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 104 - 377
Target Start/End: Complemental strand, 34231038 - 34230753
Alignment:
| Q |
104 |
agatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacc |
203 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| ||||||||| ||| |||||||| | ||||||||| |||||||| ||||||| ||||| |
|
|
| T |
34231038 |
agatgaagtgattgtaatttggaaaggtccgagatttgagaaggaatttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaacc |
34230939 |
T |
|
| Q |
204 |
caccaaactttgaatgaaaataagagtcaaagaaat------------aattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtact |
291 |
Q |
| |
|
| |||||||| |||||||||| ||| || |||||| ||||||| ||||||||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
34230938 |
cgccaaacttagaatgaaaatgggagccagagaaatcgttagagaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtact |
34230839 |
T |
|
| Q |
292 |
gttaggattgaatataccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccat |
377 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||||||||| || |||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
34230838 |
attaggatggagtataccttgaaagccttcacagccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtgacaccat |
34230753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 104 - 377
Target Start/End: Complemental strand, 34239081 - 34238808
Alignment:
| Q |
104 |
agatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacc |
203 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| ||||||||||| || | || |||||||||||||||||| |||||| ||||| |
|
|
| T |
34239081 |
agatgaagtgattgtaatttggaaaggtatgagatttgagaaggaatttcaccgccaacatgagtattagacaagtcaagatgtgtaagactcgtaaacc |
34238982 |
T |
|
| Q |
204 |
caccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgaa |
303 |
Q |
| |
|
|||||||| |||| |||||| || || ||||| ||||||||||||||||||| |||| | || | ||| || |||||||||||| ||||||| || |
|
|
| T |
34238981 |
tgccaaacttagaatcaaaataggaaccatagaaaccattgttagaaaggttgagtgtttggagatgaacaatattgaaaagggtactattaggatggag |
34238882 |
T |
|
| Q |
304 |
tataccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccat |
377 |
Q |
| |
|
||||||||||| |||||||| |||||||| || |||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
34238881 |
tataccttgaaagccttcacaaccaaggttaaggccaatgacgtgaccagatacggtgtcacacgtgacaccat |
34238808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 114 - 353
Target Start/End: Original strand, 42118787 - 42119027
Alignment:
| Q |
114 |
attgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaa-ctacgagacaagtcaagatgtgtgagactcaaaaacccaccaaact |
212 |
Q |
| |
|
||||||||||| | | ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
42118787 |
attgtaatttggataagtgtgagatttgagttggaatttcacctttaaagaaaactatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaact |
42118886 |
T |
|
| Q |
213 |
ttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgaatataccttg |
312 |
Q |
| |
|
| ||||||||| ||| | |||||| |||| | |||||| ||| |||| | || | ||||||||||||||||| ||||||||| ||| |||| |
|
|
| T |
42118887 |
tagaatgaaaacgagaagcggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttaggatgtaatttaccagt |
42118986 |
T |
|
| Q |
313 |
aagaccttcacagccaaggtttagttcaatcacgtgaccag |
353 |
Q |
| |
|
||| | || | |||||||||| || ||||||||||||||| |
|
|
| T |
42118987 |
aaggcgttaaaagccaaggttgagaccaatcacgtgaccag |
42119027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 172 - 377
Target Start/End: Complemental strand, 41570172 - 41569967
Alignment:
| Q |
172 |
agacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataa |
271 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||||||||| ||||| |||| |||| ||||||| ||||| ||||||||||||| ||| | || | |
|
|
| T |
41570172 |
agacaagtcaagatgtgtaagactcttaaatccaccaaactgagaatgcaaattggagttgaagaaatcattgtgagaaaggttgagtgattggagatga |
41570073 |
T |
|
| Q |
272 |
gcaagatggaaaagggtactgttaggattgaatataccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtga |
371 |
Q |
| |
|
|||||||| ||||| || ||||||||| | | |||||||||| | |||||||||||||| || |||||||| |||||| || | ||| ||||||| |
|
|
| T |
41570072 |
gcaagatgaaaaagagtgttgttaggataaattttaccttgaaggcattcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtga |
41569973 |
T |
|
| Q |
372 |
caccat |
377 |
Q |
| |
|
|||||| |
|
|
| T |
41569972 |
caccat |
41569967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 104 - 377
Target Start/End: Complemental strand, 25521246 - 25520973
Alignment:
| Q |
104 |
agatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacc |
203 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||| ||||| |
|
|
| T |
25521246 |
agatgaagtgattgtaatttggaaaggtgtgagatttgagttggaattttacctttaaagaaactaccagacaagtaaagatgtgtaagactctgaaacc |
25521147 |
T |
|
| Q |
204 |
caccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattgaa |
303 |
Q |
| |
|
|||||||||| | |||||||| ||| || ||||| ||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||| |
|
|
| T |
25521146 |
caccaaacttagcatgaaaatgggagccagtgaaatcattgtaagaaaggttgagtttttgaatatgagcaagatggaaaagagtactattaggatggaa |
25521047 |
T |
|
| Q |
304 |
tataccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccat |
377 |
Q |
| |
|
||||||||| || ||||||||||||||||| || |||||||| ||||| ||||||| || |||||||||| |
|
|
| T |
25521046 |
tataccttggaggccttcacagccaaggttgaggccaatcacgcgaccaaaagtggtgtcgcatgtgacaccat |
25520973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 103 - 377
Target Start/End: Original strand, 12250199 - 12250473
Alignment:
| Q |
103 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
202 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| | || || |
|
|
| T |
12250199 |
gagatgaagtgattctaatttggaaaggtgtgagatttgagttggaacttcacctttaaagaaactattagacaagtcaagatgtgtaagattaaagaat |
12250298 |
T |
|
| Q |
203 |
ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattga |
302 |
Q |
| |
|
||||||||||| |||||||||| |||| |||||| |||| ||||||||||||| |||| | || |||||||| |||||||||||| ||||| | | |
|
|
| T |
12250299 |
ccaccaaacttagaatgaaaatgggagtttgagaaatcattggaagaaaggttgagtgtttggagatgagcaagatcgaaaagggtactattaggttgta |
12250398 |
T |
|
| Q |
303 |
atataccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccat |
377 |
Q |
| |
|
||||||| | ||| |||||| |||||||| || ||||||| |||||| ||| |||||||| |||||||||| |
|
|
| T |
12250399 |
atataccatcaaggccttcatcgccaaggtcgaggccaatcacatgaccatagattgtgtcacatgtgacaccat |
12250473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 103 - 380
Target Start/End: Original strand, 11120152 - 11120429
Alignment:
| Q |
103 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
202 |
Q |
| |
|
||||| ||| |||||||||||| |||| | |||||||||||||||||||||||| | || | |||| |||||||| ||||||||| |||||| |||| |
|
|
| T |
11120152 |
gagataaagggattgtaatttggaaagatatgagatttgagttggaatttcaccataaatgttactataagacaagtaaagatgtgtaagactctgaaac |
11120251 |
T |
|
| Q |
203 |
ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggattga |
302 |
Q |
| |
|
||||||||||| ||||||||| |||| | |||||| ||||| |||||||||| |||| | || | ||||||||||||||||||| || |||| | |
|
|
| T |
11120252 |
ccaccaaacttagaatgaaaacgagagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgta |
11120351 |
T |
|
| Q |
303 |
atataccttgaagaccttcacagccaaggtttagttcaatcacgtgaccagtgatggtgtcacacgtgacaccattcc |
380 |
Q |
| |
|
|||| ||||||||||||||||||||||| || || |||||||| |||||| ||||||||| |||||||||||||||| |
|
|
| T |
11120352 |
atatgccttgaagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgcacgtgacaccattcc |
11120429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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